Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 NME1-207ENST00000480143 964 ntTSL 2 BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CTDP1Q9Y5B0 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 AL160286.2-201ENST00000567150 934 ntBASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 AL512408.1-201ENST00000569378 2000 ntBASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC22.44■■□□□ 1.18
CTDP1Q9Y5B0 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 TSPY14P-201ENST00000303979 915 ntBASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 TERF1P1-201ENST00000311003 1181 ntBASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 MFAP1P1-201ENST00000442257 1255 ntBASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 ECEL1P2-202ENST00000465689 757 ntBASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 AL590326.2-201ENST00000625139 305 ntBASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC22.43■■□□□ 1.18
CTDP1Q9Y5B0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 AP005212.1-201ENST00000581547 1997 ntBASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 ARMC10P1-201ENST00000313754 855 ntBASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 HIST1H2APS4-201ENST00000362070 348 ntBASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 DERL1-203ENST00000419562 918 ntTSL 2 BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CTDP1Q9Y5B0 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 FEM1AP1-201ENST00000431297 1995 ntBASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
CTDP1Q9Y5B0 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CTDP1Q9Y5B0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CTDP1Q9Y5B0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
CTDP1Q9Y5B0 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC22.4■■□□□ 1.18
CTDP1Q9Y5B0 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CTDP1Q9Y5B0 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CTDP1Q9Y5B0 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CTDP1Q9Y5B0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CTDP1Q9Y5B0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms