Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 LINC01023-201ENST00000606054 436 ntBASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 AL353708.3-201ENST00000610272 989 ntBASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 AP005212.1-201ENST00000581547 1997 ntBASIC18.7■□□□□ 0.58
CLIP3Q96DZ5 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 TFP1-202ENST00000475455 1573 ntBASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 TSPY15P-201ENST00000457163 923 ntBASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 CR392000.1-201ENST00000624770 1228 ntBASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CLIP3Q96DZ5 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 YBX1P10-201ENST00000444752 975 ntBASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CLIP3Q96DZ5 AL512408.1-201ENST00000569378 2000 ntBASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP3Q96DZ5 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms