Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 CRYGFP-201ENST00000418459 633 ntBASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 FAM210CP-201ENST00000445714 574 ntBASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC60Q8IWA6 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 KRT8P41-201ENST00000533985 1514 ntBASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 RCN1P1-201ENST00000400413 996 ntBASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 FAM207BP-201ENST00000447172 505 ntBASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 KRT18P21-201ENST00000515767 1272 ntBASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 SLC25A1P4-201ENST00000567977 778 ntBASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC60Q8IWA6 LINC01568-207ENST00000641790 1380 ntBASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 AC096733.2-201ENST00000609937 1394 ntBASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC60Q8IWA6 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CCDC60Q8IWA6 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 MFAP1P1-201ENST00000442257 1255 ntBASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC60Q8IWA6 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms