Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 VENTXP5-201ENST00000523979 775 ntBASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 SMG8-203ENST00000578922 2178 ntBASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.03■□□□□ 0.16
CSPG4Q6UVK1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CSPG4Q6UVK1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CSPG4Q6UVK1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 UNC93B7-201ENST00000509439 705 ntBASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 MIR3652-201ENST00000579335 131 ntBASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CSPG4Q6UVK1 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms