Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PRKDCP78527 TBC1D3P2-202ENST00000577902 1649 ntBASIC14.12□□□□□ -0.15
PRKDCP78527 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC14.12□□□□□ -0.15
PRKDCP78527 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PRKDCP78527 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PRKDCP78527 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PRKDCP78527 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PRKDCP78527 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PRKDCP78527 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.12□□□□□ -0.15
PRKDCP78527 AF238378.1-201ENST00000526806 358 ntBASIC14.12□□□□□ -0.15
PRKDCP78527 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PRKDCP78527 MIR3197-201ENST00000582241 73 ntBASIC14.12□□□□□ -0.15
PRKDCP78527 AL773604.1-201ENST00000617417 272 ntBASIC14.12□□□□□ -0.15
PRKDCP78527 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PRKDCP78527 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PRKDCP78527 ECEL1P1-201ENST00000373592 1742 ntBASIC14.12□□□□□ -0.15
PRKDCP78527 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.12□□□□□ -0.15
PRKDCP78527 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC14.12□□□□□ -0.15
PRKDCP78527 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC14.11□□□□□ -0.15
PRKDCP78527 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC14.11□□□□□ -0.15
PRKDCP78527 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.11□□□□□ -0.15
PRKDCP78527 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 IGHV3-22-201ENST00000520721 359 ntBASIC14.11□□□□□ -0.15
PRKDCP78527 IGHV3OR16-7-201ENST00000604106 360 ntBASIC14.11□□□□□ -0.15
PRKDCP78527 AL691403.2-201ENST00000618460 490 ntBASIC14.11□□□□□ -0.15
PRKDCP78527 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.11□□□□□ -0.15
PRKDCP78527 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC14.11□□□□□ -0.15
PRKDCP78527 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC14.11□□□□□ -0.15
PRKDCP78527 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.11□□□□□ -0.15
PRKDCP78527 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
PRKDCP78527 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC14.11□□□□□ -0.15
PRKDCP78527 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.11□□□□□ -0.15
PRKDCP78527 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.11□□□□□ -0.15
PRKDCP78527 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC14.11□□□□□ -0.15
PRKDCP78527 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PRKDCP78527 AC242852.2-201ENST00000615738 1807 ntBASIC14.11□□□□□ -0.15
PRKDCP78527 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
PRKDCP78527 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.1□□□□□ -0.15
PRKDCP78527 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.1□□□□□ -0.15
PRKDCP78527 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC14.1□□□□□ -0.15
PRKDCP78527 AC005229.4-201ENST00000610085 2198 ntBASIC14.1□□□□□ -0.15
PRKDCP78527 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
PRKDCP78527 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
PRKDCP78527 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.1□□□□□ -0.15
PRKDCP78527 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.1□□□□□ -0.15
PRKDCP78527 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
PRKDCP78527 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.1□□□□□ -0.15
PRKDCP78527 RNPS1P1-201ENST00000507437 918 ntBASIC14.1□□□□□ -0.15
PRKDCP78527 AC138894.3-201ENST00000603787 634 ntBASIC14.1□□□□□ -0.15
PRKDCP78527 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.1□□□□□ -0.15
PRKDCP78527 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
PRKDCP78527 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC14.1□□□□□ -0.15
PRKDCP78527 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.1□□□□□ -0.15
PRKDCP78527 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PRKDCP78527 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC14.09□□□□□ -0.15
PRKDCP78527 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.09□□□□□ -0.15
PRKDCP78527 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PRKDCP78527 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.09□□□□□ -0.15
PRKDCP78527 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC14.09□□□□□ -0.15
PRKDCP78527 MIR7706-201ENST00000613747 67 ntBASIC14.09□□□□□ -0.15
PRKDCP78527 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC14.09□□□□□ -0.15
PRKDCP78527 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PRKDCP78527 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
PRKDCP78527 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PRKDCP78527 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.09□□□□□ -0.15
PRKDCP78527 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.09□□□□□ -0.15
PRKDCP78527 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.09□□□□□ -0.15
PRKDCP78527 MIR2861-201ENST00000636310 90 ntBASIC14.09□□□□□ -0.15
PRKDCP78527 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC14.09□□□□□ -0.15
PRKDCP78527 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PRKDCP78527 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
PRKDCP78527 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PRKDCP78527 MFF-203ENST00000349901 1716 ntTSL 2 BASIC14.09□□□□□ -0.15
PRKDCP78527 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms