Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.01■□□□□ 0.47
RNF4P78317 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
RNF4P78317 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
RNF4P78317 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF4P78317 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF4P78317 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RNF4P78317 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
RNF4P78317 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RNF4P78317 AL355355.2-201ENST00000442321 338 ntBASIC18■□□□□ 0.47
RNF4P78317 AC026471.5-201ENST00000615068 467 ntBASIC18■□□□□ 0.47
RNF4P78317 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18■□□□□ 0.47
RNF4P78317 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RNF4P78317 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF4P78317 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.99■□□□□ 0.47
RNF4P78317 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.99■□□□□ 0.47
RNF4P78317 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.99■□□□□ 0.47
RNF4P78317 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.99■□□□□ 0.47
RNF4P78317 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.99■□□□□ 0.47
RNF4P78317 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
RNF4P78317 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.99■□□□□ 0.47
RNF4P78317 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 AC131212.4-201ENST00000623606 975 ntBASIC17.99■□□□□ 0.47
RNF4P78317 AL031985.4-201ENST00000642138 673 ntBASIC17.99■□□□□ 0.47
RNF4P78317 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.99■□□□□ 0.47
RNF4P78317 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RNF4P78317 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.99■□□□□ 0.47
RNF4P78317 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.99■□□□□ 0.47
RNF4P78317 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
RNF4P78317 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.98■□□□□ 0.47
RNF4P78317 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.98■□□□□ 0.47
RNF4P78317 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.98■□□□□ 0.47
RNF4P78317 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 NUDT16P1-203ENST00000513809 620 ntBASIC17.98■□□□□ 0.47
RNF4P78317 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.98■□□□□ 0.47
RNF4P78317 AP003071.4-201ENST00000562276 1284 ntBASIC17.98■□□□□ 0.47
RNF4P78317 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.98■□□□□ 0.47
RNF4P78317 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.98■□□□□ 0.47
RNF4P78317 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
RNF4P78317 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.98■□□□□ 0.47
RNF4P78317 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.98■□□□□ 0.47
RNF4P78317 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.98■□□□□ 0.47
RNF4P78317 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RNF4P78317 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.97■□□□□ 0.47
RNF4P78317 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 AC125437.2-201ENST00000625180 2167 ntBASIC17.97■□□□□ 0.47
RNF4P78317 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.97■□□□□ 0.47
RNF4P78317 AC004980.1-204ENST00000429707 299 ntBASIC17.97■□□□□ 0.47
RNF4P78317 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RNF4P78317 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF4P78317 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.97■□□□□ 0.47
RNF4P78317 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.97■□□□□ 0.47
RNF4P78317 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF4P78317 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF4P78317 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RNF4P78317 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.97■□□□□ 0.47
RNF4P78317 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.97■□□□□ 0.47
RNF4P78317 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.97■□□□□ 0.47
RNF4P78317 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.97■□□□□ 0.47
RNF4P78317 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms