Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A4P53420 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.85■□□□□ 0.93
COL4A4P53420 KRT8P17-201ENST00000453110 1448 ntBASIC20.85■□□□□ 0.93
COL4A4P53420 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A4P53420 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A4P53420 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 AC018553.1-201ENST00000616682 1458 ntBASIC20.85■□□□□ 0.93
COL4A4P53420 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A4P53420 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
COL4A4P53420 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 Z85996.1-201ENST00000494644 937 ntBASIC20.85■□□□□ 0.93
COL4A4P53420 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
COL4A4P53420 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.85■□□□□ 0.93
COL4A4P53420 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.85■□□□□ 0.93
COL4A4P53420 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.85■□□□□ 0.93
COL4A4P53420 LINC01521-201ENST00000504184 1943 ntBASIC20.85■□□□□ 0.93
COL4A4P53420 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A4P53420 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A4P53420 TFP1-202ENST00000475455 1573 ntBASIC20.85■□□□□ 0.93
COL4A4P53420 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
COL4A4P53420 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
COL4A4P53420 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
COL4A4P53420 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
COL4A4P53420 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 AC092667.1-201ENST00000434301 2586 ntBASIC20.84■□□□□ 0.93
COL4A4P53420 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A4P53420 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A4P53420 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.84■□□□□ 0.93
COL4A4P53420 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.84■□□□□ 0.93
COL4A4P53420 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 AC092338.2-201ENST00000568827 1415 ntBASIC20.84■□□□□ 0.93
COL4A4P53420 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
COL4A4P53420 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.84■□□□□ 0.93
COL4A4P53420 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.84■□□□□ 0.93
COL4A4P53420 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL4A4P53420 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
COL4A4P53420 PVRIG2P-201ENST00000435460 978 ntBASIC20.83■□□□□ 0.93
COL4A4P53420 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.83■□□□□ 0.93
COL4A4P53420 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.83■□□□□ 0.93
COL4A4P53420 ZNF444P1-201ENST00000559497 298 ntBASIC20.83■□□□□ 0.93
COL4A4P53420 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.83■□□□□ 0.93
COL4A4P53420 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.83■□□□□ 0.93
COL4A4P53420 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.83■□□□□ 0.93
COL4A4P53420 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A4P53420 AC023511.2-201ENST00000618803 211 ntBASIC20.83■□□□□ 0.93
COL4A4P53420 AL691432.3-201ENST00000621860 400 ntBASIC20.83■□□□□ 0.93
COL4A4P53420 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A4P53420 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A4P53420 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
COL4A4P53420 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A4P53420 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL4A4P53420 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A4P53420 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.83■□□□□ 0.92
COL4A4P53420 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A4P53420 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A4P53420 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A4P53420 TSPY17P-201ENST00000450329 467 ntBASIC20.83■□□□□ 0.92
COL4A4P53420 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.83■□□□□ 0.92
COL4A4P53420 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.83■□□□□ 0.92
COL4A4P53420 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A4P53420 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL4A4P53420 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A4P53420 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A4P53420 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A4P53420 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL4A4P53420 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
COL4A4P53420 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A4P53420 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.82■□□□□ 0.92
COL4A4P53420 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A4P53420 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A4P53420 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A4P53420 AC008040.2-201ENST00000461049 708 ntBASIC20.82■□□□□ 0.92
COL4A4P53420 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.82■□□□□ 0.92
COL4A4P53420 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.82■□□□□ 0.92
COL4A4P53420 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.82■□□□□ 0.92
COL4A4P53420 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL4A4P53420 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A4P53420 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.82■□□□□ 0.92
COL4A4P53420 AC099778.1-201ENST00000568593 1911 ntBASIC20.82■□□□□ 0.92
COL4A4P53420 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms