Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
MSH6P52701 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
MSH6P52701 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC26.98■■□□□ 1.91
MSH6P52701 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
MSH6P52701 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC26.97■■□□□ 1.91
MSH6P52701 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC26.97■■□□□ 1.91
MSH6P52701 AC079781.3-201ENST00000449110 356 ntBASIC26.97■■□□□ 1.91
MSH6P52701 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
MSH6P52701 AL732292.2-201ENST00000609649 430 ntBASIC26.97■■□□□ 1.91
MSH6P52701 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC26.97■■□□□ 1.91
MSH6P52701 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.97■■□□□ 1.91
MSH6P52701 AL049796.1-201ENST00000565336 1766 ntBASIC26.97■■□□□ 1.91
MSH6P52701 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.97■■□□□ 1.91
MSH6P52701 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC26.97■■□□□ 1.91
MSH6P52701 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC26.97■■□□□ 1.91
MSH6P52701 AP002414.4-201ENST00000589764 1148 ntBASIC26.97■■□□□ 1.91
MSH6P52701 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
MSH6P52701 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC26.96■■□□□ 1.91
MSH6P52701 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH6P52701 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH6P52701 AC244015.2-201ENST00000616358 1861 ntBASIC26.96■■□□□ 1.91
MSH6P52701 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC26.96■■□□□ 1.91
MSH6P52701 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH6P52701 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC26.96■■□□□ 1.91
MSH6P52701 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC26.96■■□□□ 1.91
MSH6P52701 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH6P52701 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH6P52701 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
MSH6P52701 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
MSH6P52701 TSPY19P-201ENST00000418461 509 ntBASIC26.96■■□□□ 1.91
MSH6P52701 TSPY18P-201ENST00000441642 509 ntBASIC26.96■■□□□ 1.91
MSH6P52701 KRT18P1-202ENST00000452408 1331 ntBASIC26.96■■□□□ 1.91
MSH6P52701 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC26.96■■□□□ 1.91
MSH6P52701 AC092597.1-201ENST00000487352 616 ntBASIC26.96■■□□□ 1.91
MSH6P52701 KRT8P41-201ENST00000533985 1514 ntBASIC26.96■■□□□ 1.91
MSH6P52701 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC26.96■■□□□ 1.91
MSH6P52701 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC26.96■■□□□ 1.91
MSH6P52701 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC26.96■■□□□ 1.91
MSH6P52701 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC26.96■■□□□ 1.91
MSH6P52701 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
MSH6P52701 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
MSH6P52701 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
MSH6P52701 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
MSH6P52701 RASA4DP-201ENST00000460726 1199 ntBASIC26.95■■□□□ 1.9
MSH6P52701 AC106795.1-205ENST00000512851 1056 ntBASIC26.95■■□□□ 1.9
MSH6P52701 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC26.95■■□□□ 1.9
MSH6P52701 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
MSH6P52701 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
MSH6P52701 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC26.95■■□□□ 1.9
MSH6P52701 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC26.95■■□□□ 1.9
MSH6P52701 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
MSH6P52701 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
MSH6P52701 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
MSH6P52701 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
MSH6P52701 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
MSH6P52701 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
MSH6P52701 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
MSH6P52701 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
MSH6P52701 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
MSH6P52701 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC26.94■■□□□ 1.9
MSH6P52701 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC26.94■■□□□ 1.9
MSH6P52701 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC26.94■■□□□ 1.9
MSH6P52701 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
MSH6P52701 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC26.93■■□□□ 1.9
MSH6P52701 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
MSH6P52701 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC26.93■■□□□ 1.9
MSH6P52701 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
MSH6P52701 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC26.93■■□□□ 1.9
MSH6P52701 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
MSH6P52701 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
MSH6P52701 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC26.93■■□□□ 1.9
MSH6P52701 SLC25A6P4-201ENST00000586535 553 ntBASIC26.93■■□□□ 1.9
MSH6P52701 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC26.93■■□□□ 1.9
MSH6P52701 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC26.93■■□□□ 1.9
MSH6P52701 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC26.93■■□□□ 1.9
MSH6P52701 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC26.93■■□□□ 1.9
MSH6P52701 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC26.93■■□□□ 1.9
MSH6P52701 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC26.93■■□□□ 1.9
MSH6P52701 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
MSH6P52701 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 LINC00565-201ENST00000562710 2331 ntBASIC26.92■■□□□ 1.9
MSH6P52701 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 AC034232.1-201ENST00000506026 1064 ntBASIC26.92■■□□□ 1.9
MSH6P52701 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC26.92■■□□□ 1.9
MSH6P52701 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
MSH6P52701 AC139530.3-201ENST00000620344 690 ntBASIC26.92■■□□□ 1.9
MSH6P52701 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms