Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
HMGA1P17096 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGA1P17096 AC007663.1-201ENST00000438948 1240 ntBASIC20.19■□□□□ 0.82
HMGA1P17096 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGA1P17096 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGA1P17096 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGA1P17096 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 CKBP1-201ENST00000565489 1086 ntBASIC20.19■□□□□ 0.82
HMGA1P17096 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.19■□□□□ 0.82
HMGA1P17096 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGA1P17096 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGA1P17096 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGA1P17096 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGA1P17096 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HMGA1P17096 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
HMGA1P17096 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
HMGA1P17096 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
HMGA1P17096 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
HMGA1P17096 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGA1P17096 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGA1P17096 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGA1P17096 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
HMGA1P17096 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.18■□□□□ 0.82
HMGA1P17096 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
HMGA1P17096 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGA1P17096 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
HMGA1P17096 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.18■□□□□ 0.82
HMGA1P17096 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 CCR12P-201ENST00000446203 998 ntBASIC20.18■□□□□ 0.82
HMGA1P17096 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGA1P17096 AC006011.2-201ENST00000621313 1158 ntBASIC20.18■□□□□ 0.82
HMGA1P17096 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.18■□□□□ 0.82
HMGA1P17096 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
HMGA1P17096 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
HMGA1P17096 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
HMGA1P17096 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGA1P17096 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
HMGA1P17096 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGA1P17096 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGA1P17096 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGA1P17096 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGA1P17096 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGA1P17096 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.17■□□□□ 0.82
HMGA1P17096 HMGA1P5-201ENST00000412453 271 ntBASIC20.17■□□□□ 0.82
HMGA1P17096 LIN28AP1-201ENST00000429574 405 ntBASIC20.17■□□□□ 0.82
HMGA1P17096 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGA1P17096 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
HMGA1P17096 AL590326.2-201ENST00000625139 305 ntBASIC20.17■□□□□ 0.82
HMGA1P17096 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGA1P17096 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGA1P17096 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGA1P17096 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGA1P17096 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGA1P17096 AC104417.2-201ENST00000562989 1793 ntBASIC20.16■□□□□ 0.82
HMGA1P17096 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGA1P17096 DUX4L26-201ENST00000489078 1255 ntBASIC20.16■□□□□ 0.82
HMGA1P17096 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HMGA1P17096 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGA1P17096 AC010653.2-201ENST00000623505 997 ntBASIC20.16■□□□□ 0.82
HMGA1P17096 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
HMGA1P17096 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGA1P17096 KRT8P11-201ENST00000409686 1436 ntBASIC20.16■□□□□ 0.82
HMGA1P17096 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGA1P17096 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGA1P17096 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGA1P17096 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGA1P17096 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
HMGA1P17096 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGA1P17096 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGA1P17096 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGA1P17096 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HMGA1P17096 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGA1P17096 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
HMGA1P17096 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.15■□□□□ 0.82
HMGA1P17096 ATP5G1P1-201ENST00000448724 379 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms