Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 AC092338.2-201ENST00000568827 1415 ntBASIC19.8■□□□□ 0.76
HOXC11O43248 ARMC10P1-201ENST00000313754 855 ntBASIC19.8■□□□□ 0.76
HOXC11O43248 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.8■□□□□ 0.76
HOXC11O43248 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.8■□□□□ 0.76
HOXC11O43248 AL023803.3-201ENST00000615559 522 ntBASIC19.8■□□□□ 0.76
HOXC11O43248 AC006011.2-201ENST00000621313 1158 ntBASIC19.8■□□□□ 0.76
HOXC11O43248 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.8■□□□□ 0.76
HOXC11O43248 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC11O43248 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
HOXC11O43248 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HOXC11O43248 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC11O43248 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
HOXC11O43248 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HOXC11O43248 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
HOXC11O43248 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 AL391422.3-201ENST00000603791 2761 ntBASIC19.79■□□□□ 0.76
HOXC11O43248 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXC11O43248 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 CA15P1-201ENST00000481698 905 ntBASIC19.79■□□□□ 0.76
HOXC11O43248 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXC11O43248 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXC11O43248 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXC11O43248 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.79■□□□□ 0.76
HOXC11O43248 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXC11O43248 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXC11O43248 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
HOXC11O43248 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXC11O43248 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
HOXC11O43248 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.78■□□□□ 0.76
HOXC11O43248 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC11O43248 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.78■□□□□ 0.76
HOXC11O43248 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
HOXC11O43248 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
HOXC11O43248 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC11O43248 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC11O43248 AC007663.1-201ENST00000438948 1240 ntBASIC19.78■□□□□ 0.76
HOXC11O43248 BX664615.1-201ENST00000443558 458 ntBASIC19.78■□□□□ 0.76
HOXC11O43248 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC11O43248 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC11O43248 CKBP1-201ENST00000565489 1086 ntBASIC19.78■□□□□ 0.76
HOXC11O43248 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.78■□□□□ 0.76
HOXC11O43248 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC11O43248 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXC11O43248 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 AC099778.1-201ENST00000568593 1911 ntBASIC19.78■□□□□ 0.76
HOXC11O43248 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXC11O43248 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HOXC11O43248 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.77■□□□□ 0.76
HOXC11O43248 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
HOXC11O43248 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
HOXC11O43248 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
HOXC11O43248 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
HOXC11O43248 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.77■□□□□ 0.76
HOXC11O43248 TSPY17P-201ENST00000450329 467 ntBASIC19.77■□□□□ 0.76
HOXC11O43248 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC11O43248 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.77■□□□□ 0.76
HOXC11O43248 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
HOXC11O43248 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC11O43248 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
HOXC11O43248 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXC11O43248 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
HOXC11O43248 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXC11O43248 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
HOXC11O43248 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms