Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 AC239800.4-201ENST00000603712 296 ntBASIC15.13■□□□□ 0.01
COL6A5A8TX70 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 DYM-203ENST00000442713 2147 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 AC139887.3-201ENST00000568585 713 ntBASIC15.13■□□□□ 0.01
COL6A5A8TX70 NAA38-203ENST00000575071 553 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 AC134684.3-201ENST00000641758 218 ntBASIC15.13■□□□□ 0.01
COL6A5A8TX70 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 CYMP-203ENST00000474680 1263 ntBASIC15.12■□□□□ 0.01
COL6A5A8TX70 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.12■□□□□ 0.01
COL6A5A8TX70 AC083906.6-201ENST00000641366 219 ntBASIC15.12■□□□□ 0.01
COL6A5A8TX70 AC079781.4-201ENST00000641908 219 ntBASIC15.12■□□□□ 0.01
COL6A5A8TX70 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 LINC00265-3P-201ENST00000447588 903 ntBASIC15.12■□□□□ 0.01
COL6A5A8TX70 RPL13AP23-201ENST00000480739 586 ntBASIC15.12■□□□□ 0.01
COL6A5A8TX70 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.12■□□□□ 0.01
COL6A5A8TX70 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A5A8TX70 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A5A8TX70 KRT8P17-201ENST00000453110 1448 ntBASIC15.11■□□□□ 0.01
COL6A5A8TX70 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 KRT8P41-201ENST00000533985 1514 ntBASIC15.11■□□□□ 0.01
COL6A5A8TX70 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 FAM8A3P-201ENST00000427218 844 ntBASIC15.11■□□□□ 0.01
COL6A5A8TX70 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 AC009065.1-201ENST00000564055 1225 ntBASIC15.11■□□□□ 0.01
COL6A5A8TX70 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A5A8TX70 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A5A8TX70 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms