Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 METTL21AP1-201ENST00000438852 635 ntBASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 DNAJB3-202ENST00000449667 1266 ntBASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 MIR2861-201ENST00000636310 90 ntBASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC85CA6NKD9 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 AL049840.3-201ENST00000602669 611 ntBASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 FAM99A-202ENST00000538190 1989 ntBASIC21.61■■□□□ 1.05
CCDC85CA6NKD9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 SCARNA2-201ENST00000458748 420 ntBASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 RFPL4AP1-201ENST00000530883 850 ntBASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 AL356488.2-201ENST00000602755 427 ntBASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 KRT8P17-201ENST00000453110 1448 ntBASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC85CA6NKD9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 AC027601.4-201ENST00000611259 610 ntBASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC85CA6NKD9 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 AC011484.1-201ENST00000377652 1995 ntBASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 YBX2P1-201ENST00000394192 760 ntBASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 RNF126P1-202ENST00000569893 925 ntBASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 Z69720.1-201ENST00000601483 472 ntBASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC85CA6NKD9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
CCDC85CA6NKD9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.58■■□□□ 1.04
CCDC85CA6NKD9 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.58■■□□□ 1.04
CCDC85CA6NKD9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.58■■□□□ 1.04
CCDC85CA6NKD9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC85CA6NKD9 AC018553.1-201ENST00000616682 1458 ntBASIC21.58■■□□□ 1.04
CCDC85CA6NKD9 ECEL1P1-201ENST00000373592 1742 ntBASIC21.58■■□□□ 1.04
CCDC85CA6NKD9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 AL117328.2-201ENST00000624617 1940 ntBASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 DNAJB3-201ENST00000446806 729 ntBASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 AC024243.1-201ENST00000609234 778 ntBASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 IGHV3-41-201ENST00000613121 348 ntBASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 AC233702.3-201ENST00000578656 1387 ntBASIC21.57■■□□□ 1.04
CCDC85CA6NKD9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC85CA6NKD9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms