Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 GMFBP1-201ENST00000467831 427 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 RN7SL390P-201ENST00000470634 284 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC126389.1-201ENST00000477436 290 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC058823.1-201ENST00000485315 474 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 B3GNTL1P1-201ENST00000509174 289 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 RNA5SP278-201ENST00000517055 102 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 MIR4312-201ENST00000579909 76 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AL021879.1-201ENST00000611756 288 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 MIR8089-201ENST00000620165 82 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC106782.7-201ENST00000624024 418 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC127459.3-201ENST00000624328 466 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC133555.5-201ENST00000624430 418 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AC061999.1-201ENST00000624454 177 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 AL669831.3-213ENST00000636676 183 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 RACGAP1P-201ENST00000550663 1879 ntBASIC9□□□□□ -0.97
TRIM35Q9UPQ4 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
TRIM35Q9UPQ4 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC105074.1-201ENST00000623380 3095 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 ZNF611-202ENST00000453741 4380 ntTSL 4 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 RNU6-777P-201ENST00000364265 104 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 RN7SKP118-201ENST00000364331 330 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 SNORA70.3-201ENST00000365075 132 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 Y_RNA.496-201ENST00000384444 101 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 RNU6-823P-201ENST00000391042 103 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AL590635.1-201ENST00000406314 586 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 RPSAP60-201ENST00000415403 880 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 HMGB3P11-201ENST00000440127 604 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 CXCR2P1-202ENST00000443392 1074 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 FO393415.2-201ENST00000480085 343 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 RPS27P27-201ENST00000498779 255 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 RNU6-1213P-201ENST00000517075 94 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC087752.2-201ENST00000521219 281 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC131281.1-201ENST00000522984 164 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC140063.1-201ENST00000541343 259 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC093519.1-201ENST00000566109 298 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 MIR744-201ENST00000578242 98 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 SNORA70D-201ENST00000578836 135 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC087575.1-201ENST00000585087 229 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC245052.7-201ENST00000601161 359 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 OR10AB1P-201ENST00000609613 938 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC011890.2-201ENST00000613393 294 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC004792.1-201ENST00000614523 137 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 MIR6774-201ENST00000614651 70 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC010149.2-201ENST00000637608 315 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 MTCO1P25-201ENST00000414449 1799 ntBASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC8.99□□□□□ -0.97
TRIM35Q9UPQ4 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 OAT-208ENST00000539214 1864 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
TRIM35Q9UPQ4 RN7SKP191-201ENST00000364713 306 ntBASIC8.98□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms