Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 SCARNA22-201ENST00000503991 125 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC098799.3-201ENST00000506095 438 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC008033.2-201ENST00000542626 177 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 RPL21P7-201ENST00000557463 483 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC044860.2-201ENST00000561005 179 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC010680.3-201ENST00000604215 520 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC013244.1-201ENST00000604279 193 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AL391358.1-201ENST00000605342 190 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC008966.2-201ENST00000606157 453 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 OR6R2P-201ENST00000609216 300 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC004948.1-201ENST00000609858 672 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 CR392039.4-201ENST00000624968 501 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS39Q96JC1 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS39Q96JC1 EOGT-210ENST00000615922 1931 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS39Q96JC1 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC007390.2-201ENST00000606229 3803 ntBASIC4.65□□□□□ -1.67
VPS39Q96JC1 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS39Q96JC1 AC090229.1-201ENST00000590983 1609 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 RN7SKP267-201ENST00000410381 285 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC007559.1-201ENST00000428736 355 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 CEACAMP1-201ENST00000434624 1035 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 OR52J1P-201ENST00000450596 932 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 ATP5G1P3-201ENST00000463301 410 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC004453.1-201ENST00000487895 408 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 HMGB1P3-201ENST00000502802 616 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 ARL4AP1-201ENST00000503220 705 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC093770.1-201ENST00000511559 571 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 TCP11X3P-202ENST00000514289 1254 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS39Q96JC1 GSTP1P1-201ENST00000548078 319 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AL161713.1-201ENST00000555538 145 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC106785.3-201ENST00000564064 847 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC211433.2-201ENST00000608433 387 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 MIR7155-201ENST00000615925 56 ntBASIC4.64□□□□□ -1.67
VPS39Q96JC1 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS39Q96JC1 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS39Q96JC1 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS39Q96JC1 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS39Q96JC1 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS39Q96JC1 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AL353743.4-201ENST00000422653 1547 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 IRF5P1-201ENST00000504852 2164 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS39Q96JC1 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS39Q96JC1 RNU1-20P-201ENST00000363314 162 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AL645927.1-201ENST00000396783 406 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 RN7SKP278-201ENST00000410504 342 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 YY1P1-201ENST00000427625 668 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC073587.1-201ENST00000447093 876 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 MTND2P8-201ENST00000450555 1025 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC092691.2-201ENST00000461787 803 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms