Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC004938.1-201ENST00000438468 308 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 H2AFZP5-201ENST00000446960 382 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC073587.1-201ENST00000447093 876 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 RPL23AP37-201ENST00000479658 549 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC002456.2-201ENST00000509356 380 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 RN7SKP141-201ENST00000516167 338 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 CDH12P4-201ENST00000517835 295 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 CDH12P3-201ENST00000517935 295 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 CDH12P1-201ENST00000518435 295 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC013701.1-201ENST00000522657 465 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 MIR4700-201ENST00000578311 74 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC104687.2-201ENST00000604442 342 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC005084.1-201ENST00000605160 304 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AP003117.2-201ENST00000606010 545 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC242628.1-201ENST00000606810 391 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC105429.2-201ENST00000610567 517 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 EIF3FP1-201ENST00000613970 806 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC090510.2-201ENST00000617465 629 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 AC140113.4-201ENST00000622087 222 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 CDRT1-208ENST00000630868 794 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 CYP4F35P-202ENST00000636121 390 ntBASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
ZNF540Q8NDQ6 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC025031.4-201ENST00000621248 3271 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RN7SKP104-201ENST00000362605 328 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 MIR600-201ENST00000385007 98 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 HNRNPDP2-201ENST00000406475 478 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AL603766.1-201ENST00000407763 664 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 U3.35-201ENST00000408405 208 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RN7SKP126-201ENST00000411143 300 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RPL21P108-201ENST00000413857 481 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC006466.1-201ENST00000438721 289 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC092647.3-201ENST00000443044 633 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 EIF2S2P2-201ENST00000447161 982 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 SNORD108-201ENST00000459332 71 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RPL21P103-201ENST00000479921 488 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RN7SL817P-201ENST00000480777 288 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RN7SL558P-201ENST00000497468 299 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RN7SKP260-201ENST00000516907 149 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC134698.5-201ENST00000519444 336 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 PTP4A1P6-201ENST00000531034 478 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 ATP5J2P6-201ENST00000565203 266 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RN7SL176P-201ENST00000580352 264 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AL392112.1-201ENST00000605115 829 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AL445222.1-201ENST00000607259 628 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC004825.2-201ENST00000616634 455 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC012414.7-202ENST00000622705 1090 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 AC015804.1-201ENST00000622935 435 ntBASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
ZNF540Q8NDQ6 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 AC012020.1-201ENST00000624541 1728 ntBASIC4.47□□□□□ -1.69
ZNF540Q8NDQ6 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms