Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 AC006971.1-201ENST00000407916 4486 ntBASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.81□□□□□ -1.64
HDDC3Q8N4P3 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 FAM3C2-201ENST00000312214 681 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 RNU6-185P-201ENST00000384421 107 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 RNU4-25P-201ENST00000410569 230 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 GSTM3P2-201ENST00000412746 530 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC013404.1-201ENST00000413068 249 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC007738.1-201ENST00000413892 348 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AL451139.1-201ENST00000434718 346 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 MRPL35P2-201ENST00000448009 511 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 IFNWP4-201ENST00000453148 294 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 NIP7P2-201ENST00000485801 544 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 SUMO1P1-201ENST00000497904 306 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 SNORA48.9-201ENST00000516419 162 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 HMGB1P23-201ENST00000518743 568 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 OR8A2P-201ENST00000528631 952 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC023575.1-201ENST00000580510 358 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 RPL12P25-202ENST00000598100 674 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC055764.2-201ENST00000610089 670 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC005962.2-201ENST00000611427 652 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 MIR6716-201ENST00000613413 80 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC015726.3-201ENST00000624501 418 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC116563.2-201ENST00000624751 535 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 OR52H1-202ENST00000641796 1061 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC120338.1-201ENST00000625074 1541 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC093311.1-201ENST00000506586 2021 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 DDX18P4-201ENST00000511690 1966 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC009643.2-201ENST00000603543 1448 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 AC025574.1-201ENST00000554784 1653 ntBASIC4.8□□□□□ -1.64
HDDC3Q8N4P3 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 RNU4-39P-201ENST00000362455 127 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 SNORD113.2-201ENST00000364166 89 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AL049697.2-201ENST00000403708 294 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 RN7SKP263-201ENST00000411194 309 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 ELOCP19-201ENST00000411919 318 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 RANP4-201ENST00000413361 655 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AL592293.2-201ENST00000422292 996 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AL645608.4-201ENST00000423619 154 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AL031663.1-201ENST00000437445 219 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 NUTF2P7-201ENST00000453086 375 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AP000942.1-201ENST00000463969 747 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC109327.1-201ENST00000471666 403 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC107398.1-201ENST00000486904 505 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 RNA5SP464-201ENST00000516251 108 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AF186190.1-201ENST00000517470 480 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AL109766.1-201ENST00000555080 552 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 HMGB3P26-201ENST00000560051 582 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AGGF1P9-201ENST00000561884 913 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC021483.2-201ENST00000567415 758 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 MIR548Y-201ENST00000582739 110 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 MTCO3P22-201ENST00000603219 784 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC005191.1-201ENST00000603950 358 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC133552.5-201ENST00000604266 540 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 BNIP3P41-202ENST00000616656 861 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AC009318.3-201ENST00000616916 503 ntBASIC4.79□□□□□ -1.64
HDDC3Q8N4P3 AP000648.2-201ENST00000624182 404 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms