Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ASB8-215ENST00000540782 659 ntTSL 3 BASIC2.54□□□□□ -2
LINC00643Q86TS7 AC006064.5-201ENST00000541782 248 ntBASIC2.54□□□□□ -2
LINC00643Q86TS7 AC011602.1-201ENST00000546484 331 ntBASIC2.54□□□□□ -2
LINC00643Q86TS7 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC2.54□□□□□ -2
LINC00643Q86TS7 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.54□□□□□ -2
LINC00643Q86TS7 SNURF-202ENST00000577949 650 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
LINC00643Q86TS7 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC2.54□□□□□ -2
LINC00643Q86TS7 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC2.54□□□□□ -2
LINC00643Q86TS7 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC2.54□□□□□ -2
LINC00643Q86TS7 AC009948.4-201ENST00000604692 675 ntBASIC2.54□□□□□ -2
LINC00643Q86TS7 AL391358.1-201ENST00000605342 190 ntBASIC2.54□□□□□ -2
LINC00643Q86TS7 AL591424.2-201ENST00000617023 128 ntBASIC2.54□□□□□ -2
LINC00643Q86TS7 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC2.54□□□□□ -2
LINC00643Q86TS7 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.54□□□□□ -2
LINC00643Q86TS7 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LINC00643Q86TS7 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC2.54□□□□□ -2
LINC00643Q86TS7 CASC19-284ENST00000642142 1868 ntBASIC2.54□□□□□ -2
LINC00643Q86TS7 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC2.54□□□□□ -2
LINC00643Q86TS7 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LINC00643Q86TS7 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LINC00643Q86TS7 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC2.53□□□□□ -2
LINC00643Q86TS7 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 AL929601.4-201ENST00000613011 1341 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 SDHCP2-201ENST00000398565 501 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 MIR1266-201ENST00000408125 84 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 AL139135.1-201ENST00000412675 209 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 PGBD4P8-201ENST00000412993 562 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 AL139095.3-201ENST00000419672 1203 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC2.53□□□□□ -2
LINC00643Q86TS7 DHRS9-203ENST00000421653 1044 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC2.53□□□□□ -2
LINC00643Q86TS7 MTRF1-204ENST00000430347 557 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AL138799.3-201ENST00000438968 350 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AL356133.1-201ENST00000444762 372 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC010733.1-201ENST00000451515 401 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 MRPS31P2-201ENST00000451581 518 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 CLIC4P1-201ENST00000453177 535 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 RPL23AP56-201ENST00000460778 453 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 RN7SL812P-201ENST00000493791 279 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC114781.3-201ENST00000512083 142 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 RNA5SP43-201ENST00000516559 110 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 NDUFB9P3-201ENST00000521269 501 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC2.53□□□□□ -2
LINC00643Q86TS7 CARD16-203ENST00000525374 503 ntTSL 3 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC015720.2-201ENST00000567709 334 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 MIR4458-201ENST00000578872 75 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.53□□□□□ -2
LINC00643Q86TS7 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC020910.3-201ENST00000603701 874 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 AL135786.2-201ENST00000608422 615 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC2.53□□□□□ -2
LINC00643Q86TS7 AC132825.8-201ENST00000640783 297 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 AL442639.1-201ENST00000625030 1899 ntBASIC2.53□□□□□ -2
LINC00643Q86TS7 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC2.53□□□□□ -2
LINC00643Q86TS7 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC2.53□□□□□ -2
LINC00643Q86TS7 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LINC00643Q86TS7 USP33-201ENST00000357428 4155 ntTSL 5 BASIC2.53□□□□□ -2.01
LINC00643Q86TS7 MFSD8-242ENST00000641690 4199 ntBASIC2.53□□□□□ -2.01
LINC00643Q86TS7 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
LINC00643Q86TS7 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC058791.1-201ENST00000608412 3198 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 SNRPG-201ENST00000272348 625 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 C1orf146-202ENST00000370375 830 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RN7SKP267-201ENST00000410381 285 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 RPS7P13-201ENST00000413955 498 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 GTF2IP5-201ENST00000414608 731 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC010740.1-201ENST00000417035 684 ntBASIC2.52□□□□□ -2.01
LINC00643Q86TS7 AC006013.1-201ENST00000424888 758 ntTSL 3 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms