Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 SMG1P6-201ENST00000532337 2930 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AL442639.1-201ENST00000625030 1899 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AL034374.1-201ENST00000406329 351 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 RN7SKP16-201ENST00000410180 299 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 RNU4-74P-201ENST00000411280 161 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 RPS27AP7-201ENST00000422792 455 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 RPL18P10-201ENST00000425606 538 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 RPS17P8-201ENST00000434525 335 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 CYCSP11-201ENST00000436426 315 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 NPM1P33-201ENST00000438918 872 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AL096829.2-201ENST00000446582 742 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 HSPE1P22-201ENST00000456856 327 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 RN7SL385P-201ENST00000468873 276 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 CYCSP20-201ENST00000473154 315 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 RN7SL558P-201ENST00000497468 299 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AL049870.4-201ENST00000555741 486 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC122134.1-201ENST00000565664 1104 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC034236.3-201ENST00000605999 461 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC022960.3-201ENST00000619794 441 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AP003476.1-201ENST00000623984 516 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 AL356118.1-201ENST00000635272 1078 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 METTL8-218ENST00000638989 876 ntTSL 5 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 METTL8-219ENST00000640734 726 ntTSL 2 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
USP41Q3LFD5 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 AC026951.1-201ENST00000559530 2459 ntBASIC5.12□□□□□ -1.59
USP41Q3LFD5 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USP41Q3LFD5 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USP41Q3LFD5 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
USP41Q3LFD5 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USP41Q3LFD5 TLK1P1-201ENST00000456760 2440 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC126755.2-208ENST00000327792 462 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC138969.1-213ENST00000331436 462 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 SNORD113.2-201ENST00000364166 89 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 RNU6-1000P-201ENST00000391066 106 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 RPL5P19-201ENST00000404228 893 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 ATF1P1-201ENST00000406040 927 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 AL136131.1-201ENST00000406079 803 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 RNA5SP296-201ENST00000410523 111 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 ATG4AP1-201ENST00000416893 538 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 OR6C64P-201ENST00000419708 825 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 OR5M12P-201ENST00000423388 929 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC006994.1-201ENST00000438212 839 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
USP41Q3LFD5 ARL2BPP10-201ENST00000446487 531 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
USP41Q3LFD5 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC008379.1-201ENST00000463655 464 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 OR52A4P-201ENST00000472867 958 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 NIFKP7-201ENST00000503365 834 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC133963.2-201ENST00000513686 578 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC009643.1-201ENST00000532030 391 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC104229.1-201ENST00000561364 255 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 AC104763.3-201ENST00000613765 618 ntBASIC5.11□□□□□ -1.59
USP41Q3LFD5 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC5.11□□□□□ -1.59
USP41Q3LFD5 BX005214.3-202ENST00000619809 325 ntBASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms