Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA3P55318 AL592156.1-201ENST00000508758 304 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA3P55318 OR5AZ1P-201ENST00000527448 943 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA3P55318 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC006116.3-201ENST00000592968 361 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 AC010680.3-201ENST00000604215 520 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA3P55318 AC015722.2-201ENST00000622210 551 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
FOXA3P55318 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA3P55318 BDP1P-201ENST00000582658 1990 ntBASIC3.21□□□□□ -1.9
FOXA3P55318 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA3P55318 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 AC053481.2-202ENST00000582394 1500 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 MAPK10-373ENST00000641983 6772 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
FOXA3P55318 SNORA62.2-201ENST00000364672 152 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 SNORA71.2-201ENST00000364941 134 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA3P55318 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 SNORA37-201ENST00000384504 129 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 MIR223-201ENST00000385204 110 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 MIR3065-201ENST00000390137 79 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 RNU6ATAC7P-201ENST00000408111 127 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 MIR1282-201ENST00000408865 101 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 RNU6-603P-201ENST00000411403 107 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 AC004074.1-201ENST00000421810 1063 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 EIF1P3-201ENST00000423841 334 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 AL121776.1-201ENST00000429337 372 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA3P55318 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 AC016831.4-201ENST00000438302 307 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA3P55318 AC239809.1-201ENST00000450470 217 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 HIGD1AP8-201ENST00000453927 274 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 AL356390.1-201ENST00000455684 397 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 MTND6P32-201ENST00000457611 483 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 AC069499.1-201ENST00000489433 509 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 AC106872.2-201ENST00000494303 480 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 AC104164.2-201ENST00000496953 495 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 MTND4LP2-201ENST00000502312 285 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA3P55318 HIGD1AP14-201ENST00000507617 282 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA3P55318 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA3P55318 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA3P55318 MTND2P17-201ENST00000550281 688 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 AC004825.1-201ENST00000555068 586 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 MEG8-217ENST00000556637 924 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 AC141257.3-201ENST00000572906 215 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA3P55318 AC068020.1-201ENST00000594215 661 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 AC116447.1-201ENST00000613153 453 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 MIR6861-201ENST00000618657 64 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA3P55318 AL049767.1-202ENST00000637826 242 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 LINC01808-202ENST00000641680 1116 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
FOXA3P55318 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA3P55318 AC092079.1-201ENST00000558620 1985 ntBASIC3.2□□□□□ -1.9
FOXA3P55318 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXA3P55318 PABPC1P6-201ENST00000445594 1829 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA3P55318 AC106871.1-201ENST00000568324 3102 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
FOXA3P55318 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA3P55318 IL6-206ENST00000407492 926 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA3P55318 AP000357.1-201ENST00000409926 1165 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA3P55318 AC093698.1-201ENST00000423843 571 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 NPM1P26-201ENST00000426339 738 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 MTCO1P54-201ENST00000430139 712 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXA3P55318 FTH1P6-201ENST00000430768 320 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 MTND2P2-201ENST00000434633 945 ntBASIC3.19□□□□□ -1.9
FOXA3P55318 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms