Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
BRCA1P38398 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
BRCA1P38398 NCOA4P2-201ENST00000340589 1813 ntBASIC5.1□□□□□ -1.59
BRCA1P38398 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
BRCA1P38398 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
BRCA1P38398 AC245052.5-201ENST00000416320 649 ntBASIC5.1□□□□□ -1.59
BRCA1P38398 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.1□□□□□ -1.59
BRCA1P38398 HSFY1P1-201ENST00000423928 1178 ntBASIC5.1□□□□□ -1.59
BRCA1P38398 LDHBP3-201ENST00000514909 822 ntBASIC5.1□□□□□ -1.59
BRCA1P38398 SNORA70.24-201ENST00000517233 118 ntBASIC5.1□□□□□ -1.59
BRCA1P38398 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.1□□□□□ -1.59
BRCA1P38398 OOSP1P2-201ENST00000579644 351 ntBASIC5.1□□□□□ -1.59
BRCA1P38398 U3.45-201ENST00000607547 219 ntBASIC5.1□□□□□ -1.59
BRCA1P38398 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
BRCA1P38398 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
BRCA1P38398 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
BRCA1P38398 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
BRCA1P38398 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.1□□□□□ -1.59
BRCA1P38398 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.1□□□□□ -1.59
BRCA1P38398 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.1□□□□□ -1.59
BRCA1P38398 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
BRCA1P38398 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.1□□□□□ -1.59
BRCA1P38398 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
BRCA1P38398 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRCA1P38398 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRCA1P38398 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.09□□□□□ -1.59
BRCA1P38398 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.09□□□□□ -1.59
BRCA1P38398 CTSL3P-202ENST00000412179 788 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 PDSS1P1-201ENST00000422953 1114 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC5.09□□□□□ -1.59
BRCA1P38398 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.09□□□□□ -1.59
BRCA1P38398 FTH1P25-201ENST00000447665 469 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 RPL7P22-201ENST00000466005 733 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.09□□□□□ -1.59
BRCA1P38398 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC5.09□□□□□ -1.59
BRCA1P38398 RNU1-95P-201ENST00000516357 160 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 RNU1-128P-201ENST00000516704 160 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.09□□□□□ -1.59
BRCA1P38398 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.09□□□□□ -1.59
BRCA1P38398 MIR5684-201ENST00000585074 65 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 AL606490.9-201ENST00000603331 271 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC5.09□□□□□ -1.59
BRCA1P38398 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.09□□□□□ -1.59
BRCA1P38398 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
BRCA1P38398 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
BRCA1P38398 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.09□□□□□ -1.59
BRCA1P38398 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
BRCA1P38398 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.09□□□□□ -1.59
BRCA1P38398 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRCA1P38398 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.09□□□□□ -1.59
BRCA1P38398 NR1H5P-201ENST00000452683 1377 ntBASIC5.09□□□□□ -1.59
BRCA1P38398 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRCA1P38398 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRCA1P38398 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
BRCA1P38398 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 RNA5SP72-201ENST00000364442 117 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 SYF2P2-201ENST00000417620 583 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 AC007529.1-201ENST00000418574 2178 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 AC092647.1-201ENST00000420654 287 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.09□□□□□ -1.6
BRCA1P38398 AL358472.1-201ENST00000431295 329 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 AC006011.1-201ENST00000442758 349 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 VN1R32P-201ENST00000452234 905 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.09□□□□□ -1.6
BRCA1P38398 AL358832.1-201ENST00000497800 389 ntBASIC5.09□□□□□ -1.6
BRCA1P38398 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.09□□□□□ -1.6
BRCA1P38398 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.09□□□□□ -1.6
BRCA1P38398 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.09□□□□□ -1.6
BRCA1P38398 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.09□□□□□ -1.6
BRCA1P38398 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.08□□□□□ -1.6
BRCA1P38398 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.08□□□□□ -1.6
BRCA1P38398 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.08□□□□□ -1.6
BRCA1P38398 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 RNU6-316P-201ENST00000391027 107 ntBASIC5.08□□□□□ -1.6
BRCA1P38398 AL139247.1-201ENST00000422768 325 ntBASIC5.08□□□□□ -1.6
BRCA1P38398 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.08□□□□□ -1.6
BRCA1P38398 HMGN1P15-201ENST00000513870 295 ntBASIC5.08□□□□□ -1.6
BRCA1P38398 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.08□□□□□ -1.6
BRCA1P38398 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.08□□□□□ -1.6
BRCA1P38398 AC106782.4-201ENST00000568264 210 ntBASIC5.08□□□□□ -1.6
BRCA1P38398 AC022655.2-201ENST00000577280 318 ntBASIC5.08□□□□□ -1.6
BRCA1P38398 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.08□□□□□ -1.6
BRCA1P38398 AL160290.3-201ENST00000604869 165 ntBASIC5.08□□□□□ -1.6
BRCA1P38398 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
BRCA1P38398 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.08□□□□□ -1.6
BRCA1P38398 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BRCA1P38398 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
BRCA1P38398 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
BRCA1P38398 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms