Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 OR4G2P-201ENST00000328113 903 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AL121886.1-201ENST00000358609 435 ntBASIC5.41□□□□□ -1.54
MSX2P35548 RNU6-253P-201ENST00000384730 105 ntBASIC5.41□□□□□ -1.54
MSX2P35548 MTCO3P31-201ENST00000405526 789 ntBASIC5.41□□□□□ -1.54
MSX2P35548 RPL35AP3-201ENST00000414680 288 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AC016831.2-201ENST00000417179 352 ntBASIC5.41□□□□□ -1.54
MSX2P35548 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 RPL7P44-201ENST00000424827 742 ntBASIC5.41□□□□□ -1.54
MSX2P35548 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX2P35548 MTND1P2-201ENST00000430604 821 ntBASIC5.41□□□□□ -1.54
MSX2P35548 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 AC005297.1-201ENST00000444765 862 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX2P35548 MTCO2P25-201ENST00000447065 681 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 SEPT7P3-201ENST00000455017 621 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX2P35548 RN7SL168P-201ENST00000463821 279 ntBASIC5.41□□□□□ -1.54
MSX2P35548 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX2P35548 RN7SKP183-201ENST00000517169 324 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.41□□□□□ -1.54
MSX2P35548 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC5.41□□□□□ -1.54
MSX2P35548 MED28P5-201ENST00000528254 438 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.41□□□□□ -1.54
MSX2P35548 AC024405.1-201ENST00000532521 1042 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AC005832.3-201ENST00000537929 631 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC5.41□□□□□ -1.54
MSX2P35548 AL358913.1-201ENST00000554342 121 ntBASIC5.41□□□□□ -1.54
MSX2P35548 RPS3AP4-201ENST00000555161 764 ntBASIC5.41□□□□□ -1.54
MSX2P35548 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX2P35548 AC122134.1-201ENST00000565664 1104 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
MSX2P35548 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.41□□□□□ -1.54
MSX2P35548 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 AL356055.1-201ENST00000602528 446 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AC016727.1-205ENST00000605437 569 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AP002360.3-201ENST00000607673 710 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AC025253.1-201ENST00000613623 543 ntBASIC5.41□□□□□ -1.54
MSX2P35548 SEPT14P19-203ENST00000633205 211 ntBASIC5.41□□□□□ -1.54
MSX2P35548 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 ATP8A2P3-201ENST00000426792 1536 ntBASIC5.41□□□□□ -1.54
MSX2P35548 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC5.41□□□□□ -1.54
MSX2P35548 AC090181.3-201ENST00000624777 1514 ntBASIC5.41□□□□□ -1.54
MSX2P35548 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 AC073136.1-201ENST00000449426 2884 ntBASIC5.41□□□□□ -1.54
MSX2P35548 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
MSX2P35548 AL360270.2-201ENST00000562952 5985 ntBASIC5.41□□□□□ -1.54
MSX2P35548 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 SMG1P7-201ENST00000565246 2704 ntBASIC5.4□□□□□ -1.54
MSX2P35548 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.4□□□□□ -1.54
MSX2P35548 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX2P35548 AC217777.1-201ENST00000570034 1471 ntBASIC5.4□□□□□ -1.54
MSX2P35548 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX2P35548 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
MSX2P35548 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX2P35548 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX2P35548 Y_RNA.303-201ENST00000364998 94 ntBASIC5.4□□□□□ -1.54
MSX2P35548 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX2P35548 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX2P35548 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 SUGT1P2-201ENST00000379452 992 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AL034374.1-201ENST00000406329 351 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 VTA1P1-201ENST00000414044 866 ntBASIC5.4□□□□□ -1.54
MSX2P35548 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 AC019050.1-201ENST00000418508 492 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 AC023141.3-201ENST00000436698 278 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.4□□□□□ -1.54
MSX2P35548 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.4□□□□□ -1.54
MSX2P35548 VN1R34P-201ENST00000447387 883 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AL592447.1-201ENST00000447592 540 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AL445466.1-201ENST00000448432 357 ntBASIC5.4□□□□□ -1.54
MSX2P35548 OR7E116P-201ENST00000448529 957 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AL591363.1-201ENST00000450091 483 ntBASIC5.4□□□□□ -1.54
MSX2P35548 RPL36AP33-201ENST00000450395 310 ntBASIC5.4□□□□□ -1.54
MSX2P35548 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
MSX2P35548 DDX39BP2-208ENST00000453923 258 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 UBFD1P1-201ENST00000473259 814 ntBASIC5.4□□□□□ -1.54
MSX2P35548 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 ARL2BPP4-201ENST00000506854 471 ntBASIC5.4□□□□□ -1.54
MSX2P35548 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.4□□□□□ -1.54
MSX2P35548 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX2P35548 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.4□□□□□ -1.54
MSX2P35548 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms