Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 B4GALNT2-202ENST00000393354 8657 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 RNU1-5P-201ENST00000362684 144 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 Y_RNA.106-201ENST00000363189 100 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 Y_RNA.276-201ENST00000364732 109 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 CREM-214ENST00000395887 849 ntTSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 AL078604.1-201ENST00000404609 466 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 SNORA77.2-201ENST00000408571 112 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 RNU6-1050P-201ENST00000410388 107 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 POLHP1-201ENST00000411806 470 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 AC012065.2-201ENST00000421295 375 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AC005040.1-201ENST00000437783 482 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 AC079781.1-201ENST00000441505 394 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 FO393415.2-201ENST00000480085 343 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 RNA5SP287-201ENST00000516358 103 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 RNU6-255P-201ENST00000516957 105 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 AC078899.1-201ENST00000521432 1185 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
COL9A1P20849 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 AL137161.1-201ENST00000532231 390 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC7.51□□□□□ -1.21
COL9A1P20849 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 AC074050.1-201ENST00000563247 211 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AC026458.1-201ENST00000564330 438 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 AC068790.3-201ENST00000602988 553 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AL512782.1-201ENST00000603093 364 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 AC092747.3-201ENST00000603769 301 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 LAPTM4BP2-201ENST00000604542 446 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 AL138726.1-201ENST00000614873 333 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 uc_338.21-201ENST00000622458 147 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
COL9A1P20849 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 AC105046.1-201ENST00000566457 4997 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 LOXHD1-201ENST00000300591 3970 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 AL929601.3-201ENST00000613990 2086 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.51□□□□□ -1.21
COL9A1P20849 ANKS1B-215ENST00000549493 3328 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 MYO1A-203ENST00000442789 3658 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 CYFIP2-221ENST00000618329 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 MEF2C-222ENST00000514028 3393 ntTSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 USP3-201ENST00000268049 5311 ntTSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 PCDHB1-201ENST00000306549 8210 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
COL9A1P20849 UQCRC2P1-201ENST00000417777 1332 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 PARP9-201ENST00000360356 3198 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 ERVFRD-1-202ENST00000542862 3184 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
COL9A1P20849 ERAP2-201ENST00000379904 3219 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
COL9A1P20849 AC126773.4-201ENST00000612545 3043 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 NLRP3-203ENST00000366496 3996 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 AL442639.1-201ENST00000625030 1899 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 YAF2-201ENST00000327791 4156 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
COL9A1P20849 ZMYND8-203ENST00000352431 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 Y_RNA.29-201ENST00000362570 113 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 RNA5SP514-201ENST00000363717 111 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 SNORA58B-201ENST00000364259 136 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 LCN1P2-201ENST00000372030 223 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 RNU6-1093P-201ENST00000391194 107 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 RNA5SP53-201ENST00000391299 120 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC7.5□□□□□ -1.21
COL9A1P20849 RNU2-36P-201ENST00000410361 191 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC7.5□□□□□ -1.21
COL9A1P20849 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC7.5□□□□□ -1.21
COL9A1P20849 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC7.5□□□□□ -1.21
COL9A1P20849 ARHGAP42P2-201ENST00000416089 2140 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 AC073069.1-201ENST00000428657 441 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC7.5□□□□□ -1.21
COL9A1P20849 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC7.5□□□□□ -1.21
COL9A1P20849 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC7.5□□□□□ -1.21
COL9A1P20849 AC009518.3-201ENST00000438972 253 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC7.5□□□□□ -1.21
COL9A1P20849 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 PCMTD1P1-201ENST00000455560 355 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC7.5□□□□□ -1.21
COL9A1P20849 RPS23P3-201ENST00000470993 430 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 NDUFB5P1-201ENST00000508134 564 ntBASIC7.5□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms