Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC108471.1-201ENST00000513977 287 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 RNU6-759P-201ENST00000516740 103 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 C1GALT1P3-201ENST00000522049 819 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 CBX3P7-201ENST00000532876 502 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.12□□□□□ -1.43
COL6A1P12109 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC005224.3-201ENST00000584683 2140 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC012254.4-201ENST00000588843 273 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC008759.1-201ENST00000589783 983 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AP001981.2-201ENST00000603241 418 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AC106791.2-201ENST00000604680 391 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC011504.1-201ENST00000623331 4103 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 MVP-219ENST00000629059 120 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL6A1P12109 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 CYP4F35P-202ENST00000636121 390 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 AC074101.1-201ENST00000637861 241 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 MFSD8-239ENST00000641590 2479 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AL591135.1-201ENST00000401578 5914 ntBASIC6.12□□□□□ -1.43
COL6A1P12109 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL6A1P12109 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.12□□□□□ -1.43
COL6A1P12109 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL6A1P12109 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A1P12109 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL6A1P12109 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A1P12109 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A1P12109 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A1P12109 RNU6-553P-201ENST00000364047 96 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 RNU6-178P-201ENST00000384631 104 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A1P12109 SLC9B1P2-201ENST00000398120 1184 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 AC005189.1-201ENST00000431286 310 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.11□□□□□ -1.43
COL6A1P12109 COX7BP2-201ENST00000437976 242 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 H3F3BP1-201ENST00000440551 403 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC6.11□□□□□ -1.43
COL6A1P12109 AL929288.2-201ENST00000446368 407 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 MEMO1P4-201ENST00000453590 386 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 SNRPCP3-201ENST00000474888 476 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.11□□□□□ -1.43
COL6A1P12109 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC6.11□□□□□ -1.43
COL6A1P12109 RN7SKP141-201ENST00000516167 338 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.11□□□□□ -1.43
COL6A1P12109 AC022880.1-201ENST00000534017 973 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC6.11□□□□□ -1.43
COL6A1P12109 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 AL049870.4-201ENST00000555741 486 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 AGGF1P8-201ENST00000562979 1000 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 AC022884.3-201ENST00000579571 248 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC6.11□□□□□ -1.43
COL6A1P12109 RN7SL52P-201ENST00000584271 284 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.11□□□□□ -1.43
COL6A1P12109 AC008745.1-201ENST00000604064 271 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 RN7SL722P-201ENST00000617780 284 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 RN7SL565P-201ENST00000618246 284 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 AC092656.1-203ENST00000624134 423 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 MFSD8-216ENST00000641147 4009 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 AC009313.2-201ENST00000417893 1941 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 HSPA8P14-201ENST00000552265 1805 ntBASIC6.11□□□□□ -1.43
COL6A1P12109 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL6A1P12109 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL6A1P12109 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.1□□□□□ -1.43
COL6A1P12109 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.1□□□□□ -1.43
COL6A1P12109 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL6A1P12109 OR5H15-201ENST00000383696 930 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 ATP5F1P3-201ENST00000397213 657 ntBASIC6.1□□□□□ -1.43
COL6A1P12109 ERHP2-201ENST00000402323 299 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms