Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 RN7SL447P-201ENST00000494711 245 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AC005798.1-201ENST00000513715 387 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC6.34□□□□□ -1.39
HMGB1P09429 AC027544.3-201ENST00000535082 757 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC6.34□□□□□ -1.39
HMGB1P09429 NMNAT1P5-201ENST00000559657 841 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC6.34□□□□□ -1.39
HMGB1P09429 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC6.34□□□□□ -1.39
HMGB1P09429 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC6.34□□□□□ -1.39
HMGB1P09429 AC103792.1-201ENST00000603591 919 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AC104687.2-201ENST00000604442 342 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AC005252.1-201ENST00000604518 1063 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 Z82195.1-201ENST00000604558 398 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AL354760.1-201ENST00000608357 643 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 VN1R7P-201ENST00000619242 903 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
HMGB1P09429 MIR8080-201ENST00000622224 89 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.34□□□□□ -1.39
HMGB1P09429 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 MTCO1P14-201ENST00000441695 1559 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC6.34□□□□□ -1.39
HMGB1P09429 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.34□□□□□ -1.4
HMGB1P09429 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC6.34□□□□□ -1.4
HMGB1P09429 BRAFP1-201ENST00000445336 2703 ntBASIC6.34□□□□□ -1.4
HMGB1P09429 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC6.33□□□□□ -1.4
HMGB1P09429 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
HMGB1P09429 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.33□□□□□ -1.4
HMGB1P09429 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 OR9G4-201ENST00000302957 984 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 MIR133B-201ENST00000362210 119 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
HMGB1P09429 RNU6-1226P-201ENST00000384317 107 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AL133388.1-201ENST00000404509 287 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 RNU6-575P-201ENST00000411326 105 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 TRBV26OR9-2-201ENST00000432077 293 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AC090018.1-201ENST00000434369 367 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AL590399.6-201ENST00000446396 307 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC6.33□□□□□ -1.4
HMGB1P09429 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC6.33□□□□□ -1.4
HMGB1P09429 RPL35AP19-201ENST00000469425 329 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.33□□□□□ -1.4
HMGB1P09429 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.33□□□□□ -1.4
HMGB1P09429 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC6.33□□□□□ -1.4
HMGB1P09429 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC6.33□□□□□ -1.4
HMGB1P09429 Vault.1-201ENST00000516474 102 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 RNU4-60P-201ENST00000517239 135 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC6.33□□□□□ -1.4
HMGB1P09429 MORF4L1P3-201ENST00000525966 950 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 OR5BC1P-201ENST00000529327 739 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 AC004825.1-201ENST00000555068 586 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AC044913.1-201ENST00000557200 430 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC6.33□□□□□ -1.4
HMGB1P09429 RNA5SP108-201ENST00000605921 117 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 AC018645.2-201ENST00000609151 472 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.33□□□□□ -1.4
HMGB1P09429 AC074101.1-201ENST00000637861 241 ntBASIC6.33□□□□□ -1.4
HMGB1P09429 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.33□□□□□ -1.4
HMGB1P09429 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.33□□□□□ -1.4
HMGB1P09429 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.33□□□□□ -1.4
HMGB1P09429 POMP-202ENST00000460403 1428 ntTSL 3 BASIC6.33□□□□□ -1.4
HMGB1P09429 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
HMGB1P09429 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
HMGB1P09429 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HMGB1P09429 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HMGB1P09429 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HMGB1P09429 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.32□□□□□ -1.4
HMGB1P09429 MTND5P3-201ENST00000438536 1800 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HMGB1P09429 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HMGB1P09429 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC6.32□□□□□ -1.4
HMGB1P09429 RNA5SP335-201ENST00000363817 110 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
HMGB1P09429 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HMGB1P09429 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
HMGB1P09429 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
HMGB1P09429 HSPA8P15-201ENST00000401676 786 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC6.32□□□□□ -1.4
HMGB1P09429 RPS3AP9-201ENST00000417027 792 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.32□□□□□ -1.4
HMGB1P09429 USP9YP7-201ENST00000436723 430 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 PPIAP17-201ENST00000438507 471 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 TPT1P13-201ENST00000449760 499 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 USP9YP32-201ENST00000452432 430 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 AC058823.1-201ENST00000485315 474 ntBASIC6.32□□□□□ -1.4
HMGB1P09429 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms