Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC097634.1-201ENST00000604491 2467 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 Y_RNA.26-201ENST00000362539 101 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 RNU6-1290P-201ENST00000362957 109 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 Y_RNA.122-201ENST00000363331 96 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 U3.14-201ENST00000365363 227 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 Y_RNA.473-201ENST00000384333 102 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 MIR498-201ENST00000385134 124 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 U3.25-201ENST00000391209 220 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AL031985.1-201ENST00000392713 418 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 MED15P8-201ENST00000411601 545 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 RPL7P2-201ENST00000427639 268 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC079922.1-201ENST00000443291 359 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC002381.1-201ENST00000447049 280 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AL118520.1-201ENST00000450770 291 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 RPS15AP17-201ENST00000470598 390 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 ZNF695-204ENST00000487338 826 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC114300.1-201ENST00000502347 280 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 PPIAP6-201ENST00000557078 499 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC009119.1-204ENST00000561599 564 ntTSL 4 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 MIR3146-201ENST00000580367 79 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC090415.1-201ENST00000581877 847 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AC092747.3-201ENST00000603769 301 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 MZT1P2-201ENST00000604387 248 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AL627230.1-201ENST00000613077 211 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 CASC19-232ENST00000641480 1244 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 MTCO1P24-201ENST00000515438 1558 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 AL023806.3-201ENST00000638502 2704 ntBASIC7.5□□□□□ -1.21
VPS9D1Q9Y2B5 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 SYNPR-204ENST00000460711 2383 ntTSL 2 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 EEF1A1P26-201ENST00000458319 1363 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 MIR614-201ENST00000385082 90 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 RNA5SP105-201ENST00000391123 113 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 IYD-205ENST00000392256 882 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 MYB-206ENST00000420123 1051 ntTSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 DDX11L10-201ENST00000430178 571 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AL031963.2-201ENST00000433761 398 ntTSL 2 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC073909.1-201ENST00000447112 999 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC007000.1-201ENST00000453064 794 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 MRPS21P1-201ENST00000453850 223 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AL133232.1-201ENST00000458293 483 ntTSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 GLRXP3-201ENST00000470810 321 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 RN7SL335P-201ENST00000482790 304 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 RPL23AP72-201ENST00000492447 435 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 TMEM251P1-201ENST00000503717 318 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC022559.1-201ENST00000520905 205 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC025884.1-201ENST00000556034 378 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 AC024614.2-201ENST00000577584 372 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 MIR4703-201ENST00000577728 79 ntBASIC7.49□□□□□ -1.21
VPS9D1Q9Y2B5 DSG1-AS1-204ENST00000581856 669 ntTSL 3 BASIC7.49□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms