Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RNU1-82P-201ENST00000390851 165 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AJ239321.1-201ENST00000424255 564 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 MTCO1P45-201ENST00000431457 267 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 VN1R48P-201ENST00000448149 1036 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 RPL5P13-201ENST00000462840 709 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 RN7SL558P-201ENST00000497468 299 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC113430.1-201ENST00000506872 718 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 RN7SKP122-201ENST00000515923 296 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 RNA5SP360-201ENST00000516555 118 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 Y_RNA.719-201ENST00000517156 106 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC233280.2-201ENST00000603917 1070 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 MLECP1-201ENST00000615893 709 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC119674.1-212ENST00000641155 993 ntBASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
TM9SF3Q9HD45 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
TM9SF3Q9HD45 AC107068.1-201ENST00000563286 4218 ntBASIC4.71□□□□□ -1.65
TM9SF3Q9HD45 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 MIR320B1-201ENST00000390209 79 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 ST13P16-201ENST00000401760 781 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 RNU4-25P-201ENST00000410569 230 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 CYCSP10-201ENST00000417973 294 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AL592293.2-201ENST00000422292 996 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AC009965.2-201ENST00000425328 970 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 ARL5AP3-201ENST00000439327 386 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AL162591.2-201ENST00000449634 317 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 FCF1P7-201ENST00000451185 558 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 Z95152.1-201ENST00000453556 656 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 CYCSP40-201ENST00000575927 294 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 RN7SL652P-201ENST00000577769 300 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AC110743.1-201ENST00000584870 478 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AC138473.1-201ENST00000605717 526 ntBASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
TM9SF3Q9HD45 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 RN7SKP267-201ENST00000410381 285 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 AC140479.3-201ENST00000418944 1126 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 UQCRBP1-201ENST00000421129 336 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 BTG3P1-201ENST00000435859 716 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 RNU7-27P-201ENST00000459281 62 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 RN7SL517P-201ENST00000462240 305 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 AC005912.1-201ENST00000495392 255 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 AC083829.1-201ENST00000503756 657 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 AC093840.1-201ENST00000511599 336 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 SNORD116-26-201ENST00000516006 96 ntBASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.7□□□□□ -1.66
TM9SF3Q9HD45 AC022882.1-201ENST00000532142 501 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 140.1 ms