Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RPL12P9-201ENST00000412942 488 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC093162.1-201ENST00000419682 124 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 EI24P4-201ENST00000423683 1078 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 ELOCP13-201ENST00000443934 329 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC068135.1-201ENST00000446164 246 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AL389915.2-201ENST00000454576 441 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 TRBV8-2-201ENST00000475637 270 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC005412.2-201ENST00000492004 341 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 HPRT1P2-201ENST00000505250 544 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 RNU6ATAC24P-201ENST00000516811 135 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 HMGN2P6-201ENST00000551091 273 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 MIR4436B2-201ENST00000581415 91 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AP005262.1-201ENST00000582646 997 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 MIR4436B1-201ENST00000583272 91 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC119501.1-201ENST00000603646 475 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC055764.2-201ENST00000610089 670 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 U6.48-201ENST00000618523 106 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC118658.2-201ENST00000618697 459 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC006963.1-201ENST00000624003 1052 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AP000648.2-201ENST00000624182 404 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 SEPT7P7-201ENST00000420492 1301 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 AC114947.2-201ENST00000565748 2125 ntBASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CHMP4CQ96CF2 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 ARHGAP42P1-201ENST00000507474 1976 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 MAPK10-320ENST00000641462 6696 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 RNU6-224P-201ENST00000384055 107 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 RNU6-549P-201ENST00000384433 107 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 RN7SKP213-201ENST00000410746 298 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 SSR1P2-201ENST00000415208 787 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 CDY14P-201ENST00000431260 1014 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 MTCYBP15-201ENST00000433123 1127 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 CDY12P-201ENST00000440679 1015 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 TPTE2P3-201ENST00000441562 1189 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 VN1R25P-201ENST00000443385 738 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 CDY13P-201ENST00000445813 1015 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 NOP56P2-201ENST00000447491 769 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 CDY23P-201ENST00000451661 1014 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 CDC42P1-201ENST00000456658 548 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 RPL7AP52-201ENST00000458096 790 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 RPL7P6-201ENST00000480903 738 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC021146.5-201ENST00000503544 545 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC006116.3-201ENST00000592968 361 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC234772.3-201ENST00000602277 528 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 AC009948.4-201ENST00000604692 675 ntBASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.15□□□□□ -1.42
CHMP4CQ96CF2 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 CASC19-221ENST00000641309 1382 ntBASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CHMP4CQ96CF2 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC6.14□□□□□ -1.43
CHMP4CQ96CF2 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CHMP4CQ96CF2 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
CHMP4CQ96CF2 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 141.5 ms