Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC245100.2-201ENST00000454544 1679 ntBASIC4.82□□□□□ -1.64
CCDC112Q8NEF3 CDY3P-201ENST00000454543 1618 ntBASIC4.82□□□□□ -1.64
CCDC112Q8NEF3 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC112Q8NEF3 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC112Q8NEF3 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC083899.2-201ENST00000423285 1376 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 MIR708-201ENST00000390708 88 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 RPL23AP48-201ENST00000406913 488 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 RAB28P1-201ENST00000411517 641 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 RSU1P3-201ENST00000412878 835 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC119751.6-201ENST00000416712 186 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 NRBF2P3-201ENST00000432731 865 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 HMGB1P16-201ENST00000447155 540 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 RBMY2TP-201ENST00000451162 947 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 RN7SL481P-201ENST00000477764 299 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC025554.1-201ENST00000505641 188 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 IGLVIV-53-201ENST00000520107 367 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AL360157.1-201ENST00000565962 87 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC020914.4-201ENST00000597690 277 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AL137072.1-201ENST00000603444 466 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC096553.1-201ENST00000605169 829 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC027287.1-201ENST00000553115 1453 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AL031985.3-201ENST00000565390 2449 ntBASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC112Q8NEF3 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 RNVU1-6-201ENST00000364688 164 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 MIR298-201ENST00000401212 88 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 AC013470.3-201ENST00000420252 1194 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 AC234779.1-201ENST00000425910 285 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 MTND6P18-201ENST00000439477 513 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 MTND2P25-201ENST00000449028 610 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 NDUFA12P1-201ENST00000455914 406 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 AC107918.3-201ENST00000533272 382 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 AC008126.1-201ENST00000549019 480 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 HMGB1P50-201ENST00000605814 607 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 AC015922.4-201ENST00000612568 690 ntBASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC112Q8NEF3 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 LINC02471-203ENST00000641941 4752 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 MIR141-201ENST00000384975 95 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 SNORA68.2-201ENST00000391263 128 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 RNA5SP113-201ENST00000410486 84 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 ARAFP1-201ENST00000422172 605 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 AC016831.4-201ENST00000438302 307 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 PTMAP3-201ENST00000447474 330 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 AC009220.1-201ENST00000451614 275 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 AL356390.1-201ENST00000455684 397 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 AC146944.2-203ENST00000502493 354 ntBASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC112Q8NEF3 AC139495.1-202ENST00000513164 354 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms