Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL049745.1-201ENST00000433953 286 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC006466.1-201ENST00000438721 289 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC011753.3-201ENST00000443436 406 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 GEMIN8P3-201ENST00000445417 720 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 TDGF1P1-201ENST00000445734 527 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AL133244.1-201ENST00000456007 258 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC090142.1-201ENST00000465776 462 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 RPS26P3-201ENST00000470205 348 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC090543.2-201ENST00000483963 348 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC004057.1-201ENST00000485827 348 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 IGLV2-34-201ENST00000490007 283 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SKA3Q8IX90 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 RNA5SP228-201ENST00000516232 133 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC069240.1-201ENST00000548774 375 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC087888.1-201ENST00000550884 1254 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 MTND6P33-201ENST00000571794 183 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC015802.5-201ENST00000607478 399 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC023813.4-201ENST00000607580 580 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 Mico1.1-201ENST00000611698 204 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AL669942.2-201ENST00000620352 697 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 MIR6730-201ENST00000622213 67 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC005086.4-201ENST00000623065 213 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SKA3Q8IX90 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SKA3Q8IX90 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SKA3Q8IX90 AC010928.1-201ENST00000592477 1447 ntBASIC4.11□□□□□ -1.75
SKA3Q8IX90 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SKA3Q8IX90 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC015813.6-201ENST00000624409 5808 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AL590240.1-201ENST00000334118 313 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 RNU4-39P-201ENST00000362455 127 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 RNU1-83P-201ENST00000363426 164 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 MT-TP-201ENST00000387461 68 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 RN7SKP267-201ENST00000410381 285 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 VDAC1P9-201ENST00000412766 841 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 MTCYBP29-201ENST00000436327 1006 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 RPL36AP15-201ENST00000444514 266 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 RPS26P28-201ENST00000470806 348 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC011005.3-201ENST00000491624 395 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC025164.1-201ENST00000496249 478 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC231760.1-201ENST00000498002 260 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AL110118.1-201ENST00000553543 400 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC008638.3-201ENST00000603341 463 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC005021.1-201ENST00000608730 355 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC234782.5-201ENST00000617723 324 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AL359757.1-201ENST00000623176 255 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 AC015908.5-201ENST00000623289 343 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
SKA3Q8IX90 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
SKA3Q8IX90 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.1□□□□□ -1.75
SKA3Q8IX90 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SKA3Q8IX90 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AL031119.1-201ENST00000404707 1879 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SKA3Q8IX90 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SKA3Q8IX90 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SKA3Q8IX90 RNA5SP513-201ENST00000364648 118 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 RNU4-7P-201ENST00000364758 141 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 RNU6-883P-201ENST00000384597 107 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms