Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
BRCA1P38398 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
BRCA1P38398 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.14□□□□□ -1.59
BRCA1P38398 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
BRCA1P38398 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
BRCA1P38398 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
BRCA1P38398 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BRCA1P38398 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
BRCA1P38398 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
BRCA1P38398 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
BRCA1P38398 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.14□□□□□ -1.59
BRCA1P38398 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BRCA1P38398 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
BRCA1P38398 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
BRCA1P38398 AL356968.2-201ENST00000412769 1257 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 OR4F13P-201ENST00000428478 931 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.13□□□□□ -1.59
BRCA1P38398 PLGLA-201ENST00000465668 449 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 SETP6-201ENST00000479329 568 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.13□□□□□ -1.59
BRCA1P38398 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.13□□□□□ -1.59
BRCA1P38398 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.13□□□□□ -1.59
BRCA1P38398 RPL21P12-201ENST00000559810 515 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.13□□□□□ -1.59
BRCA1P38398 AC091178.1-203ENST00000584586 279 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.13□□□□□ -1.59
BRCA1P38398 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.13□□□□□ -1.59
BRCA1P38398 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
BRCA1P38398 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
BRCA1P38398 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
BRCA1P38398 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
BRCA1P38398 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
BRCA1P38398 RNU1-83P-201ENST00000363426 164 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 RNA5SP175-201ENST00000364275 119 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 SNORA57.3-201ENST00000411095 141 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.13□□□□□ -1.59
BRCA1P38398 AL139099.1-201ENST00000497398 403 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.13□□□□□ -1.59
BRCA1P38398 AL021997.2-201ENST00000615674 271 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.13□□□□□ -1.59
BRCA1P38398 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
BRCA1P38398 LINC00561-201ENST00000565815 2738 ntBASIC5.13□□□□□ -1.59
BRCA1P38398 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC5.12□□□□□ -1.59
BRCA1P38398 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
BRCA1P38398 BCORP1-203ENST00000513194 5093 ntBASIC5.12□□□□□ -1.59
BRCA1P38398 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.12□□□□□ -1.59
BRCA1P38398 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
BRCA1P38398 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
BRCA1P38398 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
BRCA1P38398 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
BRCA1P38398 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.12□□□□□ -1.59
BRCA1P38398 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.12□□□□□ -1.59
BRCA1P38398 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.12□□□□□ -1.59
BRCA1P38398 AL034408.1-202ENST00000636088 415 ntBASIC5.12□□□□□ -1.59
BRCA1P38398 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.12□□□□□ -1.59
BRCA1P38398 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.12□□□□□ -1.59
BRCA1P38398 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
BRCA1P38398 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.11□□□□□ -1.59
BRCA1P38398 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.11□□□□□ -1.59
BRCA1P38398 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 AC007066.1-201ENST00000392902 381 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 RN7SKP167-201ENST00000411047 285 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.11□□□□□ -1.59
BRCA1P38398 CEACAMP1-201ENST00000434624 1035 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 AC004938.1-201ENST00000438468 308 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.11□□□□□ -1.59
BRCA1P38398 AL451050.1-201ENST00000450126 415 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 RNA5SP230-201ENST00000517039 122 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.11□□□□□ -1.59
BRCA1P38398 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC5.11□□□□□ -1.59
BRCA1P38398 DUX4L52-201ENST00000549363 777 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 AC005255.1-201ENST00000593748 216 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 AC016957.2-201ENST00000616998 848 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
BRCA1P38398 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
BRCA1P38398 PEX12P1-201ENST00000400284 1048 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 BX119904.3-201ENST00000428194 957 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 KATNBL1P2-201ENST00000433311 835 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 CYCSP32-201ENST00000440548 321 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 PPIAP3-201ENST00000450588 505 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.11□□□□□ -1.59
BRCA1P38398 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.11□□□□□ -1.59
BRCA1P38398 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.11□□□□□ -1.59
BRCA1P38398 AC018690.1-201ENST00000608144 626 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 AC055839.1-201ENST00000634467 498 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 THAP12P5-201ENST00000405864 2275 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
BRCA1P38398 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
BRCA1P38398 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
BRCA1P38398 VPS35P1-201ENST00000563400 1518 ntBASIC5.11□□□□□ -1.59
BRCA1P38398 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
BRCA1P38398 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
BRCA1P38398 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms