Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC5.43□□□□□ -1.54
MSX2P35548 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
MSX2P35548 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
MSX2P35548 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.43□□□□□ -1.54
MSX2P35548 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.43□□□□□ -1.54
MSX2P35548 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX2P35548 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.42□□□□□ -1.54
MSX2P35548 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
MSX2P35548 VN1R12P-201ENST00000403778 876 ntBASIC5.42□□□□□ -1.54
MSX2P35548 RNU6-575P-201ENST00000411326 105 ntBASIC5.42□□□□□ -1.54
MSX2P35548 RN7SKP108-201ENST00000411367 328 ntBASIC5.42□□□□□ -1.54
MSX2P35548 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.42□□□□□ -1.54
MSX2P35548 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.42□□□□□ -1.54
MSX2P35548 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 AC004448.2-201ENST00000422360 586 ntBASIC5.42□□□□□ -1.54
MSX2P35548 MTND4P28-201ENST00000426217 387 ntBASIC5.42□□□□□ -1.54
MSX2P35548 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 AC008072.1-201ENST00000434254 824 ntBASIC5.42□□□□□ -1.54
MSX2P35548 VN1R54P-201ENST00000435210 1049 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC122718.1-201ENST00000439448 744 ntBASIC5.42□□□□□ -1.54
MSX2P35548 TCEA1P3-201ENST00000443005 880 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC092601.1-201ENST00000444526 383 ntBASIC5.42□□□□□ -1.54
MSX2P35548 LINC02210-201ENST00000444561 288 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 FAR2P1-206ENST00000449736 709 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AL034369.1-201ENST00000453808 477 ntBASIC5.42□□□□□ -1.54
MSX2P35548 FAM133DP-201ENST00000464802 691 ntBASIC5.42□□□□□ -1.54
MSX2P35548 RPL23AP37-201ENST00000479658 549 ntBASIC5.42□□□□□ -1.54
MSX2P35548 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.42□□□□□ -1.54
MSX2P35548 RPS17P5-201ENST00000498293 408 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX2P35548 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX2P35548 AC006499.4-201ENST00000510947 694 ntBASIC5.42□□□□□ -1.54
MSX2P35548 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 ZNF519P4-201ENST00000514008 125 ntBASIC5.42□□□□□ -1.54
MSX2P35548 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 AP003392.2-201ENST00000527269 208 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
MSX2P35548 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 AL359219.2-201ENST00000555184 348 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX2P35548 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC5.42□□□□□ -1.54
MSX2P35548 MIR4666A-201ENST00000580160 79 ntBASIC5.42□□□□□ -1.54
MSX2P35548 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
MSX2P35548 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
MSX2P35548 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 MIR212-201ENST00000586026 110 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 EIF1P6-201ENST00000600054 334 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC009237.13-201ENST00000603193 276 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC012368.3-201ENST00000604190 219 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC009220.3-201ENST00000604318 586 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC145423.1-201ENST00000605712 336 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC091946.2-201ENST00000606105 291 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AL022394.1-201ENST00000606979 292 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AP005137.2-201ENST00000609238 400 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AL512652.1-201ENST00000619006 500 ntBASIC5.42□□□□□ -1.54
MSX2P35548 AC211486.4-201ENST00000621495 113 ntBASIC5.42□□□□□ -1.54
MSX2P35548 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
MSX2P35548 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.42□□□□□ -1.54
MSX2P35548 AC073488.6-201ENST00000632293 754 ntBASIC5.42□□□□□ -1.54
MSX2P35548 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 SEC63P2-201ENST00000503863 1939 ntBASIC5.42□□□□□ -1.54
MSX2P35548 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
MSX2P35548 PDZK1P1-202ENST00000425209 1350 ntBASIC5.42□□□□□ -1.54
MSX2P35548 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX2P35548 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.42□□□□□ -1.54
MSX2P35548 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX2P35548 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX2P35548 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 AP005432.1-201ENST00000580891 3485 ntBASIC5.41□□□□□ -1.54
MSX2P35548 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX2P35548 ENSAP3-201ENST00000312710 333 ntBASIC5.41□□□□□ -1.54
MSX2P35548 SELENOWP1-201ENST00000322792 252 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms