Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC025674.1-201ENST00000507074 324 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 HMGB1P46-201ENST00000520062 610 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 OR8A2P-201ENST00000528631 952 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AL354696.1-201ENST00000614652 497 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC022106.2-201ENST00000620114 757 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC019072.1-201ENST00000604535 1551 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC139713.2-214ENST00000642059 1811 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 RNU1-63P-201ENST00000383902 164 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 BTBD7P2-201ENST00000441962 620 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 MTND5P8-201ENST00000449817 1083 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC108120.2-201ENST00000512973 294 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 SNRPGP1-201ENST00000553864 222 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC103792.1-201ENST00000603591 919 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AP002360.3-201ENST00000607673 710 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 AC119674.1-212ENST00000641155 993 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.54□□□□□ -1.68
LHX3Q9UBR4 HSPD1P14-201ENST00000432666 1618 ntBASIC4.54□□□□□ -1.68
LHX3Q9UBR4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 NXPH1-205ENST00000602349 1953 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RNU6-532P-201ENST00000384318 107 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 SNORD96B-201ENST00000386148 79 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 U3.22-201ENST00000391120 215 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RANP4-201ENST00000413361 655 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 SNRPFP1-201ENST00000414761 252 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AL139095.3-201ENST00000419672 1203 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AL356387.2-201ENST00000422272 243 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 ZFAND6P1-201ENST00000434138 605 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AC023512.1-201ENST00000444513 499 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 CASP3P1-201ENST00000446037 609 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RPS4XP12-201ENST00000461747 709 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 RPS27AP17-201ENST00000463344 455 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 AC053481.1-201ENST00000467217 306 ntBASIC4.53□□□□□ -1.68
LHX3Q9UBR4 SUMO1P1-201ENST00000497904 306 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms