Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ATP5F1P3-201ENST00000397213 657 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 RN7SKP182-201ENST00000410772 298 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 RNU2-22P-201ENST00000411266 212 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC114814.2-201ENST00000419195 485 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC093162.1-201ENST00000419682 124 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 ZNF885P-201ENST00000420174 1098 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 GAPDHP49-201ENST00000421421 961 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 MTND4P20-201ENST00000424125 869 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 RPL23AP76-201ENST00000441860 458 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 Z92846.1-201ENST00000456203 268 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 TPTE2P5-203ENST00000458118 728 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 RNU7-125P-201ENST00000458760 62 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 COX6B1P2-201ENST00000489624 230 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 OR5BM1P-201ENST00000512021 366 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC008837.2-201ENST00000513076 418 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC024940.3-201ENST00000538551 316 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC002400.1-201ENST00000569310 726 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 MIR4700-201ENST00000578311 74 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AL031281.1-201ENST00000604049 488 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC012557.2-201ENST00000605919 418 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC116651.1-201ENST00000609724 556 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC055764.2-201ENST00000610089 670 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC022509.4-201ENST00000621404 572 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC006840.1-201ENST00000623069 542 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AC092608.3-201ENST00000625017 386 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 Z95114.1-201ENST00000624264 14574 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 AL049737.1-201ENST00000413920 1403 ntBASIC5.56□□□□□ -1.52
TDP1Q9NUW8 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 FAM3C2-201ENST00000312214 681 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 BMS1P3-201ENST00000372011 932 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 MIR105-1-201ENST00000385222 81 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 RN7SKP126-201ENST00000411143 300 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AL590762.4-201ENST00000425885 253 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 PSMD10P3-201ENST00000437000 448 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 ARL4AP3-201ENST00000441452 574 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 HMGB1P16-201ENST00000447155 540 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 RPS23P9-201ENST00000448848 438 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 BX248409.1-201ENST00000455497 255 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 GAPDHP39-201ENST00000481866 979 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 NDUFB5P1-201ENST00000508134 564 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AP000676.2-201ENST00000529711 301 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 HNRNPCP1-201ENST00000556181 766 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AC135628.1-201ENST00000568867 534 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 MIR7973-1-201ENST00000614683 76 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AC092140.2-201ENST00000618027 521 ntBASIC5.55□□□□□ -1.52
TDP1Q9NUW8 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
TDP1Q9NUW8 RNF6P1-201ENST00000444889 1784 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms