Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 ELOCP6-201ENST00000429066 328 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC092162.1-201ENST00000432828 434 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AL450023.3-201ENST00000440592 271 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC073648.4-201ENST00000442655 781 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC073850.1-201ENST00000449243 255 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 ELOCP12-201ENST00000458706 328 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC012170.1-201ENST00000495139 359 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 POLR2KP1-201ENST00000553226 168 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AP001180.3-201ENST00000582221 145 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC116651.1-201ENST00000609724 556 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC009032.1-201ENST00000617574 431 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AC004943.3-201ENST00000624116 600 ntBASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
ZNF540Q8NDQ6 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 PANDAR-201ENST00000629595 1506 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 U3.3-201ENST00000362986 216 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 RNU1-83P-201ENST00000363426 164 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 SNORA27.3-201ENST00000364937 134 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 MIR124-3-201ENST00000384866 87 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 LRRC37BP1-201ENST00000398851 714 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC234782.4-201ENST00000417646 1048 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC244453.4-201ENST00000419150 388 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 RPS12P23-201ENST00000419579 400 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC005008.1-201ENST00000456151 612 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC018635.1-201ENST00000468292 1030 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 RN7SL826P-201ENST00000479724 288 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 RPL7P6-201ENST00000480903 738 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 NDUFA5P12-201ENST00000503796 343 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 GTF2F2P1-201ENST00000511083 675 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 HMGB1P46-201ENST00000520062 610 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 OR5D15P-201ENST00000531671 942 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC092490.3-201ENST00000545370 572 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 PCNPP1-201ENST00000552501 511 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC011447.4-201ENST00000587562 111 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC006116.3-201ENST00000592968 361 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AP005432.2-201ENST00000608162 586 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC245389.2-201ENST00000616023 576 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC243756.2-201ENST00000618406 463 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC242843.1-201ENST00000618702 573 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC090527.3-201ENST00000619041 548 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC079298.2-201ENST00000623885 459 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 AC009643.2-201ENST00000603543 1448 ntBASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
ZNF540Q8NDQ6 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
ZNF540Q8NDQ6 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms