Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 AL136984.1-201ENST00000607611 1893 ntBASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 AC079097.1-201ENST00000512187 1399 ntBASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.04□□□□□ -1.44
UBE3DQ7Z6J8 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 SNORD56.2-201ENST00000363242 71 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AL157702.1-201ENST00000398764 426 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AL450338.1-201ENST00000407987 512 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC007390.1-201ENST00000415722 356 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 TXNP5-201ENST00000441043 315 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AL356121.1-201ENST00000442911 156 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC234771.2-201ENST00000445718 597 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AL672138.1-201ENST00000450604 1015 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 RN7SL39P-201ENST00000462264 297 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 RN7SL643P-201ENST00000471845 291 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 THAP6-203ENST00000502620 582 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 FGF7P4-201ENST00000509595 295 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 IGHV4-55-201ENST00000520889 368 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 HSPA8P13-201ENST00000523715 472 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 ARL2BPP2-201ENST00000550907 489 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC009120.3-201ENST00000563335 499 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 BNIP3P23-201ENST00000599655 511 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC245014.2-201ENST00000603689 287 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 BNIP3P10-201ENST00000605360 577 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC246785.4-201ENST00000605374 287 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC103710.4-201ENST00000609301 899 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC015819.1-201ENST00000613588 663 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC090574.1-201ENST00000623186 233 ntBASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
UBE3DQ7Z6J8 AP000547.3-204ENST00000588548 2523 ntBASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 EEF1A1P42-201ENST00000613436 1331 ntBASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 RMST-202ENST00000541282 2099 ntTSL 2 BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 RNU6-115P-201ENST00000364310 107 ntBASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 RNA5SP485-201ENST00000365053 119 ntBASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 Y_RNA.356-201ENST00000365475 113 ntBASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 SNORD115.1-201ENST00000391109 76 ntBASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 NPM1P38-201ENST00000403835 865 ntBASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.02□□□□□ -1.45
UBE3DQ7Z6J8 VN1R8P-201ENST00000407739 893 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 148.8 ms