Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.59□□□□□ -1.67
COL4A4P53420 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.59□□□□□ -1.67
COL4A4P53420 PTMAP3-201ENST00000447474 330 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 AC012671.1-201ENST00000451912 203 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 AC090589.1-201ENST00000473109 362 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 RPL23AP65-201ENST00000475608 468 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
COL4A4P53420 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.59□□□□□ -1.67
COL4A4P53420 RN7SKP46-201ENST00000515942 234 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 RN7SKP157-201ENST00000516174 282 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 DYNLL1P4-201ENST00000549314 266 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.59□□□□□ -1.67
COL4A4P53420 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC4.59□□□□□ -1.67
COL4A4P53420 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC4.59□□□□□ -1.67
COL4A4P53420 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.59□□□□□ -1.67
COL4A4P53420 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.59□□□□□ -1.67
COL4A4P53420 Z98200.1-201ENST00000607298 470 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.59□□□□□ -1.67
COL4A4P53420 AC099669.2-201ENST00000616549 437 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 MIR7151-201ENST00000617477 60 ntBASIC4.59□□□□□ -1.67
COL4A4P53420 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL4A4P53420 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.59□□□□□ -1.67
COL4A4P53420 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL4A4P53420 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
COL4A4P53420 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL4A4P53420 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC4.59□□□□□ -1.68
COL4A4P53420 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.59□□□□□ -1.68
COL4A4P53420 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.58□□□□□ -1.68
COL4A4P53420 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL4A4P53420 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.58□□□□□ -1.68
COL4A4P53420 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC4.58□□□□□ -1.68
COL4A4P53420 AC091286.1-201ENST00000431233 461 ntBASIC4.58□□□□□ -1.68
COL4A4P53420 RPS3AP12-201ENST00000443616 753 ntBASIC4.58□□□□□ -1.68
COL4A4P53420 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.58□□□□□ -1.68
COL4A4P53420 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.58□□□□□ -1.68
COL4A4P53420 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.58□□□□□ -1.68
COL4A4P53420 AC107016.1-201ENST00000550463 337 ntBASIC4.58□□□□□ -1.68
COL4A4P53420 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.58□□□□□ -1.68
COL4A4P53420 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.58□□□□□ -1.68
COL4A4P53420 AC090912.3-201ENST00000609775 533 ntBASIC4.58□□□□□ -1.68
COL4A4P53420 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 CFTRP2-201ENST00000634304 199 ntBASIC4.58□□□□□ -1.68
COL4A4P53420 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.58□□□□□ -1.68
COL4A4P53420 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 NXPH1-205ENST00000602349 1953 ntBASIC4.58□□□□□ -1.68
COL4A4P53420 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 MAPK10-286ENST00000641208 8747 ntBASIC4.58□□□□□ -1.68
COL4A4P53420 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
COL4A4P53420 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL4A4P53420 OR11H4-201ENST00000315409 1082 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 RN7SKP74-201ENST00000362849 309 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 RNA5SP22-201ENST00000365393 109 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC108032.1-201ENST00000416706 207 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 SKP1P3-201ENST00000429280 487 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 AL157884.3-201ENST00000448273 1184 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 RPL7P15-201ENST00000461190 712 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.57□□□□□ -1.68
COL4A4P53420 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 IGKV2D-19-201ENST00000523346 262 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 MIR5685-201ENST00000579080 79 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 VN1R92P-201ENST00000598511 928 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 AC079587.1-201ENST00000603846 277 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 AL160290.3-201ENST00000604869 165 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL4A4P53420 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
COL4A4P53420 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
COL4A4P53420 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 RNU1-44P-201ENST00000384453 163 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 RNU11-4P-201ENST00000391149 133 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 AL078604.1-201ENST00000404609 466 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 AC010740.1-201ENST00000417035 684 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 KRR1P1-201ENST00000419430 803 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL4A4P53420 ABCF2P2-201ENST00000450549 296 ntBASIC4.57□□□□□ -1.68
COL4A4P53420 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.57□□□□□ -1.68
COL4A4P53420 RPL7P49-201ENST00000471402 708 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms