Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL6A3P12111 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC4.26□□□□□ -1.73
COL6A3P12111 AP001284.1-201ENST00000528393 2118 ntBASIC4.26□□□□□ -1.73
COL6A3P12111 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
COL6A3P12111 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
COL6A3P12111 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A3P12111 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A3P12111 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
COL6A3P12111 DNAJA1P3-201ENST00000399417 1194 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 RPL21P23-201ENST00000446654 460 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 EIF4A1P11-201ENST00000451239 222 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 S100A11P2-201ENST00000467589 312 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A3P12111 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.25□□□□□ -1.73
COL6A3P12111 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL6A3P12111 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A3P12111 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL6A3P12111 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.25□□□□□ -1.73
COL6A3P12111 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 RNU6ATAC3P-201ENST00000387974 126 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.25□□□□□ -1.73
COL6A3P12111 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.25□□□□□ -1.73
COL6A3P12111 RNU1-30P-201ENST00000606575 163 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.25□□□□□ -1.73
COL6A3P12111 AC011503.2-201ENST00000594230 1500 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL6A3P12111 AP004289.2-201ENST00000444413 1457 ntBASIC4.25□□□□□ -1.73
COL6A3P12111 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
COL6A3P12111 SERPINA7P1-201ENST00000443077 631 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.24□□□□□ -1.73
COL6A3P12111 MIR7853-201ENST00000584820 132 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC4.24□□□□□ -1.73
COL6A3P12111 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.24□□□□□ -1.73
COL6A3P12111 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.24□□□□□ -1.73
COL6A3P12111 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
COL6A3P12111 AC116667.1-201ENST00000604855 2072 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 TAF9BP1-201ENST00000396646 746 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 SNORA3.3-201ENST00000408712 125 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 SRIP2-201ENST00000428470 166 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 AP001992.1-205ENST00000462248 379 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 AC010285.3-201ENST00000511668 676 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.24□□□□□ -1.73
COL6A3P12111 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.24□□□□□ -1.73
COL6A3P12111 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 AL353743.1-202ENST00000431724 1695 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.24□□□□□ -1.73
COL6A3P12111 AL445487.1-201ENST00000415694 1580 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.24□□□□□ -1.73
COL6A3P12111 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
COL6A3P12111 RN7SKP185-201ENST00000362813 326 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 RNA5SP307-201ENST00000362863 116 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 SNORA38.1-201ENST00000364172 131 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 AC097713.2-201ENST00000430199 356 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.24□□□□□ -1.73
COL6A3P12111 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.24□□□□□ -1.73
COL6A3P12111 MIR7106-201ENST00000612419 65 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 AP001153.1-201ENST00000641024 338 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 AL513548.1-201ENST00000562904 1724 ntBASIC4.24□□□□□ -1.73
COL6A3P12111 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL6A3P12111 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
COL6A3P12111 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.23□□□□□ -1.73
COL6A3P12111 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A3P12111 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A3P12111 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.23□□□□□ -1.73
COL6A3P12111 CYCSP4-201ENST00000429682 331 ntBASIC4.23□□□□□ -1.73
COL6A3P12111 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.23□□□□□ -1.73
COL6A3P12111 RAD23BP3-201ENST00000454157 1152 ntBASIC4.23□□□□□ -1.73
COL6A3P12111 AC011825.1-201ENST00000484967 388 ntBASIC4.23□□□□□ -1.73
COL6A3P12111 RN7SL504P-201ENST00000494496 287 ntBASIC4.23□□□□□ -1.73
COL6A3P12111 AC006064.5-201ENST00000541782 248 ntBASIC4.23□□□□□ -1.73
COL6A3P12111 AL132656.3-201ENST00000606384 1595 ntBASIC4.23□□□□□ -1.73
COL6A3P12111 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A3P12111 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A3P12111 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL6A3P12111 ADAM5-202ENST00000399789 1942 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms