Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RN7SKP147-201ENST00000517154 244 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 HIGD1AP18-201ENST00000520730 278 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC060788.1-201ENST00000521318 469 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.15□□□□□ -1.42
COL6A1P12109 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC007115.1-201ENST00000546853 234 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL6A1P12109 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC090616.2-202ENST00000584248 222 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC015688.2-201ENST00000584523 262 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.15□□□□□ -1.42
COL6A1P12109 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.15□□□□□ -1.42
COL6A1P12109 AP003465.2-201ENST00000602571 373 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC087283.1-201ENST00000604029 1074 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC6.15□□□□□ -1.42
COL6A1P12109 AL139286.2-201ENST00000606838 396 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC092354.2-201ENST00000607786 514 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC6.15□□□□□ -1.42
COL6A1P12109 AL138960.1-201ENST00000613838 513 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AL157770.1-201ENST00000623049 439 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AL359740.1-201ENST00000624340 592 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.15□□□□□ -1.42
COL6A1P12109 MIR7641-1-201ENST00000627518 61 ntBASIC6.15□□□□□ -1.42
COL6A1P12109 AL137141.1-201ENST00000624622 4836 ntBASIC6.15□□□□□ -1.43
COL6A1P12109 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.43
COL6A1P12109 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
COL6A1P12109 AC092451.3-201ENST00000625067 1343 ntBASIC6.15□□□□□ -1.43
COL6A1P12109 API5-210ENST00000534600 1760 ntTSL 5 BASIC6.15□□□□□ -1.43
COL6A1P12109 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A1P12109 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A1P12109 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A1P12109 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A1P12109 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.15□□□□□ -1.43
COL6A1P12109 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.43
COL6A1P12109 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
COL6A1P12109 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A1P12109 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
COL6A1P12109 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL6A1P12109 OR55B1P-203ENST00000641518 2602 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 AC010266.2-201ENST00000564741 3255 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC6.14□□□□□ -1.43
COL6A1P12109 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.14□□□□□ -1.43
COL6A1P12109 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.14□□□□□ -1.43
COL6A1P12109 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 RNA5SP123-201ENST00000363244 119 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 RNU4-75P-201ENST00000364621 146 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 SNORA16A-201ENST00000384342 137 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 RNU1-149P-201ENST00000390870 161 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 EI24P3-201ENST00000399046 1062 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AL133388.1-201ENST00000404509 287 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.14□□□□□ -1.43
COL6A1P12109 BTF3P8-201ENST00000414577 526 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 RPL7P53-201ENST00000421245 739 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC019178.2-201ENST00000423595 505 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A1P12109 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 SCP2-206ENST00000430330 938 ntTSL 2 BASIC6.14□□□□□ -1.43
COL6A1P12109 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC6.14□□□□□ -1.43
COL6A1P12109 RPS3AP38-201ENST00000435889 763 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AL031667.1-201ENST00000440222 725 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A1P12109 AC097262.1-201ENST00000452559 548 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC244505.3-201ENST00000454598 187 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 NDUFAF4P3-201ENST00000456468 525 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 GTF2IP12-201ENST00000456547 356 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 RN7SL809P-201ENST00000482040 297 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC6.14□□□□□ -1.43
COL6A1P12109 DUTP1-201ENST00000493631 470 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A1P12109 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 AC008565.1-201ENST00000509046 885 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 OR5H4P-201ENST00000510851 923 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A1P12109 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A1P12109 DEFB130C-202ENST00000530001 230 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL6A1P12109 ELOCP32-201ENST00000548625 324 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.14□□□□□ -1.43
COL6A1P12109 NMNAT1P5-201ENST00000559657 841 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC087465.1-201ENST00000560574 245 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AC095057.3-201ENST00000567102 1157 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.14□□□□□ -1.43
COL6A1P12109 AP000811.1-201ENST00000603803 651 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 SUMO2P14-201ENST00000604488 293 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 RN7SKP299-201ENST00000606679 301 ntBASIC6.14□□□□□ -1.43
COL6A1P12109 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms