Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
MSH4O15457 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
MSH4O15457 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH4O15457 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH4O15457 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
MSH4O15457 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH4O15457 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH4O15457 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSH4O15457 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH4O15457 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSH4O15457 RNA5SP22-201ENST00000365393 109 ntBASIC4.86□□□□□ -1.63
MSH4O15457 SNORD66.1-201ENST00000391230 76 ntBASIC4.86□□□□□ -1.63
MSH4O15457 ST13P16-201ENST00000401760 781 ntBASIC4.86□□□□□ -1.63
MSH4O15457 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.86□□□□□ -1.63
MSH4O15457 RNA5SP36-201ENST00000410197 133 ntBASIC4.86□□□□□ -1.63
MSH4O15457 RAB28P1-201ENST00000411517 641 ntBASIC4.86□□□□□ -1.63
MSH4O15457 CASKP1-201ENST00000412870 582 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH4O15457 SEPT7P8-201ENST00000413308 775 ntBASIC4.86□□□□□ -1.63
MSH4O15457 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.86□□□□□ -1.63
MSH4O15457 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH4O15457 MTCO1P51-201ENST00000427672 1060 ntBASIC4.86□□□□□ -1.63
MSH4O15457 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.86□□□□□ -1.63
MSH4O15457 ELOCP3-201ENST00000439303 348 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AL512326.1-201ENST00000443050 721 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH4O15457 RN7SL817P-201ENST00000480777 288 ntBASIC4.86□□□□□ -1.63
MSH4O15457 RPL35P6-201ENST00000490024 372 ntBASIC4.86□□□□□ -1.63
MSH4O15457 DEFB109F-201ENST00000491870 277 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AC010374.1-201ENST00000503762 1237 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH4O15457 RNA5SP464-201ENST00000516251 108 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AC008676.3-201ENST00000521237 435 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.86□□□□□ -1.63
MSH4O15457 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.86□□□□□ -1.63
MSH4O15457 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
MSH4O15457 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.86□□□□□ -1.63
MSH4O15457 SLC25A36P1-201ENST00000590111 465 ntBASIC4.86□□□□□ -1.63
MSH4O15457 ARF4P1-201ENST00000605447 541 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AC138473.1-201ENST00000605717 526 ntBASIC4.86□□□□□ -1.63
MSH4O15457 MIR3653-201ENST00000625572 110 ntBASIC4.86□□□□□ -1.63
MSH4O15457 AC008013.2-202ENST00000637965 364 ntBASIC4.86□□□□□ -1.63
MSH4O15457 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
MSH4O15457 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
MSH4O15457 AL592182.3-201ENST00000642132 3304 ntBASIC4.86□□□□□ -1.63
MSH4O15457 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSH4O15457 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSH4O15457 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSH4O15457 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.86□□□□□ -1.63
MSH4O15457 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSH4O15457 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 AC006971.1-201ENST00000407916 4486 ntBASIC4.85□□□□□ -1.63
MSH4O15457 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSH4O15457 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSH4O15457 RNU1-14P-201ENST00000362759 152 ntBASIC4.85□□□□□ -1.63
MSH4O15457 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH4O15457 AL161909.1-201ENST00000397390 712 ntBASIC4.85□□□□□ -1.63
MSH4O15457 RN7SKP97-201ENST00000410966 333 ntBASIC4.85□□□□□ -1.63
MSH4O15457 RNU2-22P-201ENST00000411266 212 ntBASIC4.85□□□□□ -1.63
MSH4O15457 CEACAMP8-201ENST00000413902 580 ntBASIC4.85□□□□□ -1.63
MSH4O15457 PTP4A1P1-201ENST00000420539 515 ntBASIC4.85□□□□□ -1.63
MSH4O15457 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.85□□□□□ -1.63
MSH4O15457 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH4O15457 AC091390.1-201ENST00000433904 331 ntBASIC4.85□□□□□ -1.63
MSH4O15457 AL132765.1-201ENST00000434165 553 ntBASIC4.85□□□□□ -1.63
MSH4O15457 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 NPM1P33-201ENST00000438918 872 ntBASIC4.85□□□□□ -1.63
MSH4O15457 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH4O15457 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH4O15457 AC009963.2-201ENST00000453431 138 ntBASIC4.85□□□□□ -1.63
MSH4O15457 RPL10P17-201ENST00000453852 316 ntBASIC4.85□□□□□ -1.63
MSH4O15457 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 RNA5SP519-201ENST00000516480 119 ntBASIC4.85□□□□□ -1.63
MSH4O15457 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.85□□□□□ -1.63
MSH4O15457 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.85□□□□□ -1.63
MSH4O15457 AL109766.1-201ENST00000555080 552 ntBASIC4.85□□□□□ -1.63
MSH4O15457 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH4O15457 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH4O15457 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH4O15457 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH4O15457 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
MSH4O15457 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH4O15457 AC139713.2-215ENST00000641428 5037 ntBASIC4.84□□□□□ -1.63
MSH4O15457 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSH4O15457 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSH4O15457 RNU6-697P-201ENST00000363348 107 ntBASIC4.84□□□□□ -1.63
MSH4O15457 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSH4O15457 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
MSH4O15457 RPL6P29-201ENST00000414863 865 ntBASIC4.84□□□□□ -1.63
MSH4O15457 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH4O15457 UBTFL3-201ENST00000418934 1024 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms