Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC018797.1-201ENST00000510791 255 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 PRMT5P1-201ENST00000514351 598 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC006530.1-201ENST00000555980 571 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC009063.1-201ENST00000563342 702 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 MIR3154-201ENST00000577829 84 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 MIR4660-201ENST00000583549 74 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC011472.4-201ENST00000615848 491 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 LRRC77P-213ENST00000637727 880 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 RBPJP7-201ENST00000442803 1447 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 RBPJP5-201ENST00000449433 1447 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC091305.2-201ENST00000624049 1576 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC012078.1-201ENST00000405035 1646 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.33
CCDC39Q9UFE4 ZNF90P1-201ENST00000480493 1951 ntBASIC6.71□□□□□ -1.33
CCDC39Q9UFE4 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
CCDC39Q9UFE4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
CCDC39Q9UFE4 AC017104.4-201ENST00000636283 1592 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 OR56B2P-201ENST00000317102 954 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 RPL17P50-201ENST00000396131 546 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 DNAJA1P2-201ENST00000421360 1197 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 RAC1P8-201ENST00000427086 527 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 MED14P1-201ENST00000430517 648 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC245517.2-201ENST00000442890 346 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 HMGB1P48-201ENST00000446155 598 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 SEPT14P24-201ENST00000447236 180 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AL445466.1-201ENST00000448432 357 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 NFU1P2-201ENST00000448700 469 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 CCNB1IP1P3-201ENST00000454702 829 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 CCDC75P1-201ENST00000469247 791 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 PFN1P6-201ENST00000476786 399 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC109486.1-201ENST00000486833 374 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 HPRT1P2-201ENST00000505250 544 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 MTND3P22-201ENST00000510932 243 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AL163952.1-202ENST00000569625 600 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 MIR4502-201ENST00000580432 81 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 MIR6133-201ENST00000617057 108 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC015871.5-202ENST00000623252 701 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC138965.3-201ENST00000623875 498 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC012254.3-201ENST00000591183 2117 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 AC090181.3-201ENST00000624777 1514 ntBASIC6.71□□□□□ -1.34
CCDC39Q9UFE4 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 AL355852.1-201ENST00000454081 1771 ntBASIC6.7□□□□□ -1.34
CCDC39Q9UFE4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms