Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHANK3Q9BYB0 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.53□□□□□ -1.52
SHANK3Q9BYB0 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 RNU1-83P-201ENST00000363426 164 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 RNA5SP22-201ENST00000365393 109 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 RNA5SP187-201ENST00000384400 119 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 EIF4A1P1-201ENST00000420241 934 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 OR8F1P-201ENST00000425243 930 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 RPL23AP46-201ENST00000438548 490 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 AC006499.5-201ENST00000505037 514 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 AC005520.3-201ENST00000602874 370 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 AC008833.1-201ENST00000611633 691 ntBASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.52□□□□□ -1.53
SHANK3Q9BYB0 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 RAB9AP3-201ENST00000412737 573 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 RPS4XP4-201ENST00000443195 763 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 RAB9AP1-201ENST00000449393 573 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 RPL36AP13-201ENST00000457490 317 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 YPEL5P3-201ENST00000547227 352 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC107982.3-201ENST00000584957 985 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC010608.2-201ENST00000624830 470 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 OR6C71P-202ENST00000641886 1107 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AL122016.1-201ENST00000403365 367 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC236972.1-201ENST00000433225 199 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 RPL23AP37-201ENST00000479658 549 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC010460.1-201ENST00000507087 466 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 RNA5SP249-201ENST00000516127 99 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC005412.1-201ENST00000580812 1049 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AC090912.3-201ENST00000609775 533 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 AL353726.1-201ENST00000614041 1000 ntBASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHANK3Q9BYB0 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 TET1P1-201ENST00000426627 2301 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 RNA5SP432-201ENST00000362480 116 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 AL592291.1-201ENST00000403830 352 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 AC108032.1-201ENST00000416706 207 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 AP000907.1-201ENST00000428428 510 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 NOTCH2P1-201ENST00000443481 624 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 RPL23AP81-201ENST00000455252 467 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 RPS4XP18-201ENST00000495480 763 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 MIR5685-201ENST00000579080 79 ntBASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHANK3Q9BYB0 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 MIR34B-201ENST00000385076 84 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 OR4K6P-201ENST00000416478 897 ntBASIC5.49□□□□□ -1.53
SHANK3Q9BYB0 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms