Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC005539.1-201ENST00000443768 1479 ntBASIC5.45□□□□□ -1.54
MSX2P35548 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 RNU1-134P-201ENST00000362935 165 ntBASIC5.45□□□□□ -1.54
MSX2P35548 RN7SKP81-201ENST00000365603 331 ntBASIC5.45□□□□□ -1.54
MSX2P35548 SNORD94-201ENST00000386037 137 ntBASIC5.45□□□□□ -1.54
MSX2P35548 TAF9BP1-201ENST00000396646 746 ntBASIC5.45□□□□□ -1.54
MSX2P35548 RN7SKP33-201ENST00000410942 340 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.45□□□□□ -1.54
MSX2P35548 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.45□□□□□ -1.54
MSX2P35548 AC007435.1-201ENST00000421086 415 ntBASIC5.45□□□□□ -1.54
MSX2P35548 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 CYCSP46-201ENST00000423569 204 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 AC104651.1-201ENST00000427559 735 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC010975.2-201ENST00000427781 588 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC5.45□□□□□ -1.54
MSX2P35548 AC002069.1-201ENST00000429649 1159 ntBASIC5.45□□□□□ -1.54
MSX2P35548 ARMC4P1-201ENST00000438905 707 ntBASIC5.45□□□□□ -1.54
MSX2P35548 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 ST13P20-201ENST00000447996 1065 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC079776.3-201ENST00000450665 370 ntBASIC5.45□□□□□ -1.54
MSX2P35548 NPM1P9-201ENST00000453156 844 ntBASIC5.45□□□□□ -1.54
MSX2P35548 RPS7P10-201ENST00000464254 603 ntBASIC5.45□□□□□ -1.54
MSX2P35548 RPL12P30-201ENST00000488389 499 ntBASIC5.45□□□□□ -1.54
MSX2P35548 DUTP1-201ENST00000493631 470 ntBASIC5.45□□□□□ -1.54
MSX2P35548 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.45□□□□□ -1.54
MSX2P35548 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.45□□□□□ -1.54
MSX2P35548 RNU6-1308P-201ENST00000516817 103 ntBASIC5.45□□□□□ -1.54
MSX2P35548 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.45□□□□□ -1.54
MSX2P35548 OR4A43P-201ENST00000532938 908 ntBASIC5.45□□□□□ -1.54
MSX2P35548 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.45□□□□□ -1.54
MSX2P35548 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC5.45□□□□□ -1.54
MSX2P35548 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.45□□□□□ -1.54
MSX2P35548 ZNF519P3-201ENST00000557158 1032 ntBASIC5.45□□□□□ -1.54
MSX2P35548 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.45□□□□□ -1.54
MSX2P35548 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC5.45□□□□□ -1.54
MSX2P35548 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC5.45□□□□□ -1.54
MSX2P35548 AC091805.2-201ENST00000603848 235 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC092354.1-201ENST00000606057 376 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC012409.3-201ENST00000611343 981 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC023158.2-201ENST00000614876 543 ntBASIC5.45□□□□□ -1.54
MSX2P35548 AC021106.3-201ENST00000623925 531 ntBASIC5.45□□□□□ -1.54
MSX2P35548 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.45□□□□□ -1.54
MSX2P35548 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.45□□□□□ -1.54
MSX2P35548 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
MSX2P35548 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 GVINP1-202ENST00000531871 7271 ntBASIC5.45□□□□□ -1.54
MSX2P35548 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
MSX2P35548 LINC02019-201ENST00000608605 2060 ntBASIC5.44□□□□□ -1.54
MSX2P35548 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
MSX2P35548 MRRFP1-201ENST00000435941 1675 ntBASIC5.44□□□□□ -1.54
MSX2P35548 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
MSX2P35548 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 RNU6-543P-201ENST00000362576 108 ntBASIC5.44□□□□□ -1.54
MSX2P35548 MIR621-201ENST00000384919 96 ntBASIC5.44□□□□□ -1.54
MSX2P35548 AC005042.1-201ENST00000393397 800 ntBASIC5.44□□□□□ -1.54
MSX2P35548 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX2P35548 MIR548F1-201ENST00000408667 84 ntBASIC5.44□□□□□ -1.54
MSX2P35548 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX2P35548 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.44□□□□□ -1.54
MSX2P35548 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC5.44□□□□□ -1.54
MSX2P35548 FNDC3CP-201ENST00000420795 1155 ntBASIC5.44□□□□□ -1.54
MSX2P35548 GTF2IP23-201ENST00000423746 351 ntBASIC5.44□□□□□ -1.54
MSX2P35548 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC5.44□□□□□ -1.54
MSX2P35548 IPMKP1-201ENST00000425988 855 ntBASIC5.44□□□□□ -1.54
MSX2P35548 MTCO1P3-201ENST00000429327 192 ntBASIC5.44□□□□□ -1.54
MSX2P35548 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
MSX2P35548 YWHAZP2-201ENST00000440317 728 ntBASIC5.44□□□□□ -1.54
MSX2P35548 AC234771.4-201ENST00000441416 730 ntBASIC5.44□□□□□ -1.54
MSX2P35548 FGF7P6-202ENST00000451282 293 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms