Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRIM49D1C9J1S8 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
TRIM49D1C9J1S8 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
TRIM49D1C9J1S8 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC131971.1-201ENST00000332881 1482 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AL929601.4-201ENST00000613011 1341 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 MIR3065-201ENST00000390137 79 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 MIR298-201ENST00000401212 88 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 MIR937-201ENST00000401271 86 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AL049697.2-201ENST00000403708 294 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AL139095.3-201ENST00000419672 1203 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 VN1R54P-201ENST00000435210 1049 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 RPS3AP41-201ENST00000462701 778 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 RN7SL585P-201ENST00000470538 280 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 MTND3P6-201ENST00000485242 339 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 RN7SL812P-201ENST00000493791 279 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC113398.2-201ENST00000507630 558 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 NDUFB5P1-201ENST00000508134 564 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 OR5BC1P-201ENST00000529327 739 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC234775.3-201ENST00000564612 656 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 MIR3934-201ENST00000579806 107 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC008536.1-201ENST00000602872 669 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC015849.6-201ENST00000605454 474 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC004948.1-201ENST00000609858 672 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 AC093775.1-201ENST00000624154 1868 ntBASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.32□□□□□ -1.72
TRIM49D1C9J1S8 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC233968.1-201ENST00000611212 1300 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 RNU1-130P-201ENST00000363930 160 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 MIR550A3-201ENST00000390735 95 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 TRIM60P17-201ENST00000415181 719 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC244453.4-201ENST00000419150 388 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 NANOGP6-201ENST00000429190 847 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 NPM1P48-201ENST00000436002 853 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 CEACAMP6-201ENST00000452007 574 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 RPS3AP53-201ENST00000454716 778 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC053481.1-201ENST00000467217 306 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC104164.2-201ENST00000496953 495 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 HNRNPKP5-201ENST00000515300 253 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 IGHV3-63-201ENST00000518422 341 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AP000676.2-201ENST00000529711 301 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC027176.2-201ENST00000559166 746 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC010547.7-201ENST00000570323 333 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AP001160.4-201ENST00000596971 382 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC010615.3-201ENST00000597319 394 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC079587.1-201ENST00000603846 277 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC005084.1-201ENST00000605160 304 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC008785.1-201ENST00000624475 456 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 AC097504.1-201ENST00000515103 2415 ntBASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM49D1C9J1S8 CR382285.2-201ENST00000624662 1495 ntBASIC4.3□□□□□ -1.72
TRIM49D1C9J1S8 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
TRIM49D1C9J1S8 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms