Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC108475.1-201ENST00000507880 950 ntBASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 OR8A2P-201ENST00000528631 952 ntBASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 AC006349.1-201ENST00000555526 235 ntBASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 AC015802.5-201ENST00000607478 399 ntBASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 AC039056.2-201ENST00000622261 511 ntBASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC8.71□□□□□ -1.01
SHROOM4Q9ULL8 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
SHROOM4Q9ULL8 AC100778.3-201ENST00000580060 1750 ntBASIC8.71□□□□□ -1.02
SHROOM4Q9ULL8 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 COX6CP15-201ENST00000426313 211 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 RPL35AP21-201ENST00000437667 333 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 TPRKBP1-201ENST00000456243 481 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AL132838.2-201ENST00000492041 314 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 EIF2AP4-201ENST00000424793 1781 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC008549.2-201ENST00000333482 706 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 SNORA5.1-201ENST00000384275 131 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 OR1F12-201ENST00000402365 945 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 OR8G2P-201ENST00000412796 908 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 TMSB10P2-201ENST00000416049 131 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 RPL21P89-201ENST00000444021 467 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 HGF-207ENST00000453018 721 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 RPS27AP16-201ENST00000492222 470 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 MIMT1-201ENST00000597105 1050 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC008739.3-201ENST00000603262 127 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 LINC00216-201ENST00000623548 1126 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 AC004777.1-201ENST00000624317 287 ntBASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 LGI1-209ENST00000627699 664 ntTSL 3 BASIC8.7□□□□□ -1.02
SHROOM4Q9ULL8 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 TMBIM7P-201ENST00000418074 855 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 BTF3P9-201ENST00000418784 283 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 AC011998.1-201ENST00000433403 117 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 VN1R48P-201ENST00000448149 1036 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 EIF2S2P4-201ENST00000461070 984 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 AC090686.1-201ENST00000481577 749 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 AC010476.1-201ENST00000519111 851 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 OR4A2P-201ENST00000527276 913 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 AC012414.2-201ENST00000559474 187 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 AC092868.3-201ENST00000560515 784 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 BMS1P7-201ENST00000602440 1052 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 AC020634.1-201ENST00000608701 549 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 CDRT1-208ENST00000630868 794 ntBASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
SHROOM4Q9ULL8 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 OSBPL9P1-201ENST00000604744 1469 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 RNU6-729P-201ENST00000384399 107 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 AC008280.1-201ENST00000418851 412 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 AC093084.1-201ENST00000424233 687 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 MTND4LP13-201ENST00000425022 298 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 BTF3P10-201ENST00000433415 495 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 AC090142.1-201ENST00000465776 462 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 RNU1-45P-201ENST00000517191 141 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 AC016839.1-201ENST00000578162 867 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 RN7SL176P-201ENST00000580352 264 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 IPO5P1-202ENST00000600039 287 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 AC003001.2-201ENST00000616294 831 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 AP000648.2-201ENST00000624182 404 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 AL031119.1-201ENST00000404707 1879 ntBASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
SHROOM4Q9ULL8 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 AC090017.1-201ENST00000548612 1779 ntBASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms