Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AP000563.1-201ENST00000490865 758 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 RPS27AP16-201ENST00000492222 470 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 SNORD39.2-201ENST00000579995 76 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AC019131.2-201ENST00000609071 870 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AC079395.2-201ENST00000610982 737 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 SNORA11.6-201ENST00000619030 128 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AP000648.2-201ENST00000624182 404 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AC135068.12-201ENST00000637370 931 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AL672167.1-205ENST00000641112 3080 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 UGT2B26P-201ENST00000508672 1613 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AP000542.2-201ENST00000623199 6179 ntBASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CLIP4Q8N3C7 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 CIR1P2-201ENST00000514821 1342 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 OR51H2P-202ENST00000641424 3046 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC120338.1-201ENST00000625074 1541 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RNA5SP183-201ENST00000362452 119 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 U6.112-201ENST00000384129 70 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RN7SKP59-201ENST00000410520 314 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RN7SKP247-201ENST00000411094 308 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RPS24P7-201ENST00000416921 246 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AL117351.1-201ENST00000438864 766 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC069540.1-201ENST00000446320 988 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AL157827.1-201ENST00000447622 132 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 Z92846.1-201ENST00000456203 268 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 SIAH1P1-201ENST00000479411 923 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC108693.1-201ENST00000496068 432 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RPL21P131-201ENST00000497298 483 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 PGAM1P13-201ENST00000507497 754 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AL049830.4-201ENST00000555149 351 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 MIR4789-201ENST00000577469 82 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RN7SL52P-201ENST00000584271 284 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RN7SL622P-201ENST00000585292 275 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC012254.4-201ENST00000588843 273 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC233280.2-201ENST00000603917 1070 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC025175.1-201ENST00000606482 759 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AP005432.2-201ENST00000608162 586 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AP003399.1-201ENST00000637534 361 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 MTND5P31-201ENST00000419366 1374 ntBASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CLIP4Q8N3C7 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms