Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 HMGN1P9-201ENST00000515212 298 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 SCARNA16.4-201ENST00000516956 187 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 MTCO1P47-201ENST00000523889 1271 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AL353778.1-201ENST00000603149 408 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 MRPS35P3-201ENST00000603189 709 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AC000068.2-201ENST00000608816 460 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AP000255.1-201ENST00000610276 676 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AC244107.2-201ENST00000611773 76 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AL592148.2-201ENST00000612210 372 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 MIR6837-201ENST00000620884 64 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 MFSD8-245ENST00000641743 948 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 AC010266.2-201ENST00000564741 3255 ntBASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
PTCHD3Q3KNS1 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 BX005019.1-201ENST00000561881 1810 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL031595.2-201ENST00000624215 19071 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL590763.1-201ENST00000398297 1545 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 SNORD116.1-201ENST00000365628 92 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 DBIP1-201ENST00000401435 260 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 DPPA2P3-201ENST00000411853 655 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC009518.2-201ENST00000418056 731 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 SRSF1P1-201ENST00000424058 520 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 VTI1BP4-201ENST00000427516 527 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 MOB1AP1-201ENST00000430903 535 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 GSTM5P1-201ENST00000434751 660 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 COX7BP2-201ENST00000437976 242 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC105399.1-202ENST00000447303 205 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 ART2BP-201ENST00000453501 499 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL035090.1-201ENST00000454835 332 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 XACT-201ENST00000468762 497 ntTSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC096741.1-201ENST00000472250 846 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 BET1P1-201ENST00000482276 359 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 IMPA1P1-201ENST00000510718 842 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 RNA5SP92-201ENST00000516437 110 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL442163.2-201ENST00000553912 710 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 NBEAP1-201ENST00000554452 979 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC004825.1-201ENST00000555068 586 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 MIR4666A-201ENST00000580160 79 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 VN1R88P-201ENST00000596787 292 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC068790.7-201ENST00000602347 528 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC018638.7-201ENST00000605836 1114 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL450489.1-201ENST00000612071 468 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AL158163.2-201ENST00000619110 700 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC131159.1-201ENST00000621854 213 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 PABPC1P6-201ENST00000445594 1829 ntBASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms