Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
BRCA1P38398 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.22□□□□□ -1.57
BRCA1P38398 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 RNU6-213P-201ENST00000384051 104 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 PTMAP5-201ENST00000393073 333 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 SEPT7P2-202ENST00000398921 823 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.22□□□□□ -1.57
BRCA1P38398 PPIAP13-201ENST00000434706 478 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 RNA5SP360-201ENST00000516555 118 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.22□□□□□ -1.57
BRCA1P38398 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.22□□□□□ -1.57
BRCA1P38398 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 YPEL5P3-201ENST00000547227 352 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.22□□□□□ -1.57
BRCA1P38398 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.22□□□□□ -1.57
BRCA1P38398 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 AC090286.3-201ENST00000573133 187 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 AL137141.1-201ENST00000624622 4836 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 AL603750.1-201ENST00000624216 1717 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 MIR183-201ENST00000384958 110 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 AC096664.2-201ENST00000411843 406 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 BOLA3P4-201ENST00000418151 400 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 RPS20P21-201ENST00000466859 343 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 AL049874.2-201ENST00000492636 288 ntBASIC5.22□□□□□ -1.57
BRCA1P38398 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.22□□□□□ -1.57
BRCA1P38398 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
BRCA1P38398 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
BRCA1P38398 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.57
BRCA1P38398 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
BRCA1P38398 AC016588.2-201ENST00000632484 3021 ntBASIC5.21□□□□□ -1.57
BRCA1P38398 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
BRCA1P38398 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
BRCA1P38398 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
BRCA1P38398 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
BRCA1P38398 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.21□□□□□ -1.58
BRCA1P38398 NPM1P37-201ENST00000403105 874 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 CDY14P-201ENST00000431260 1014 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 CDY12P-201ENST00000440679 1015 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 CDY13P-201ENST00000445813 1015 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 CDY23P-201ENST00000451661 1014 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 DDX39BP2-208ENST00000453923 258 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 ACTR3P3-201ENST00000480448 893 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 SOD1P3-201ENST00000518682 454 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.21□□□□□ -1.58
BRCA1P38398 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.21□□□□□ -1.58
BRCA1P38398 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.21□□□□□ -1.58
BRCA1P38398 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
BRCA1P38398 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
BRCA1P38398 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
BRCA1P38398 AL355852.1-201ENST00000454081 1771 ntBASIC5.21□□□□□ -1.58
BRCA1P38398 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
BRCA1P38398 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
BRCA1P38398 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
BRCA1P38398 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
BRCA1P38398 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
BRCA1P38398 AC007068.1-201ENST00000396690 844 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 FCF1P5-201ENST00000406490 482 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 TCEA1P4-201ENST00000415066 844 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 OR5BE1P-201ENST00000425977 939 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.2□□□□□ -1.58
BRCA1P38398 ZNF415P1-201ENST00000582279 1166 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 AC116667.1-201ENST00000604855 2072 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 AP002360.3-201ENST00000607673 710 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 AL391261.4-201ENST00000616012 481 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 OR5BE1P-202ENST00000641168 1176 ntBASIC5.2□□□□□ -1.58
BRCA1P38398 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
BRCA1P38398 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
BRCA1P38398 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.2□□□□□ -1.58
BRCA1P38398 AL035425.3-201ENST00000564206 4996 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 149.8 ms