Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXC9P31274 AC096644.3-201ENST00000416788 338 ntBASIC5.83□□□□□ -1.48
HOXC9P31274 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXC9P31274 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXC9P31274 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 RPL31P53-201ENST00000457065 348 ntBASIC5.83□□□□□ -1.48
HOXC9P31274 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXC9P31274 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXC9P31274 RNA5SP519-201ENST00000516480 119 ntBASIC5.83□□□□□ -1.48
HOXC9P31274 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.83□□□□□ -1.48
HOXC9P31274 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
HOXC9P31274 AL731537.2-201ENST00000561565 951 ntBASIC5.83□□□□□ -1.48
HOXC9P31274 AC091178.1-203ENST00000584586 279 ntBASIC5.83□□□□□ -1.48
HOXC9P31274 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.83□□□□□ -1.48
HOXC9P31274 AC241377.1-201ENST00000619797 406 ntBASIC5.83□□□□□ -1.48
HOXC9P31274 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
HOXC9P31274 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXC9P31274 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXC9P31274 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.82□□□□□ -1.48
HOXC9P31274 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HOXC9P31274 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
HOXC9P31274 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXC9P31274 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.82□□□□□ -1.48
HOXC9P31274 RNA5SP283-201ENST00000365604 119 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 MIR7-1-201ENST00000384871 110 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 SNORA48.7-201ENST00000391302 135 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 RN7SKP235-201ENST00000410662 305 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 RPS20P14-201ENST00000412545 360 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AJ239321.1-201ENST00000424255 564 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXC9P31274 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXC9P31274 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXC9P31274 GTF3AP5-201ENST00000442645 697 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AL049829.1-201ENST00000465411 156 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
HOXC9P31274 AC025181.1-201ENST00000477507 416 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.82□□□□□ -1.48
HOXC9P31274 AC020593.1-201ENST00000507399 299 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.82□□□□□ -1.48
HOXC9P31274 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXC9P31274 AC104997.1-201ENST00000519761 717 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXC9P31274 TVP23BP1-201ENST00000557500 617 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXC9P31274 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXC9P31274 FAM60CP-201ENST00000591086 664 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AC025175.1-201ENST00000606482 759 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AP002360.3-201ENST00000607673 710 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AL031658.2-201ENST00000616850 651 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXC9P31274 AC007546.1-201ENST00000619452 559 ntBASIC5.82□□□□□ -1.48
HOXC9P31274 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXC9P31274 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXC9P31274 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXC9P31274 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HOXC9P31274 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
HOXC9P31274 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
HOXC9P31274 AC012078.1-201ENST00000405035 1646 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
HOXC9P31274 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC9P31274 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC9P31274 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC9P31274 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
HOXC9P31274 RNU1-14P-201ENST00000362759 152 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 RNU6-618P-201ENST00000363518 112 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC9P31274 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
HOXC9P31274 RNA5SP36-201ENST00000410197 133 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 RN7SKP33-201ENST00000410942 340 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 RPL6P29-201ENST00000414863 865 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.81□□□□□ -1.48
HOXC9P31274 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXC9P31274 VTI1BP4-201ENST00000427516 527 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 MRPS21P3-201ENST00000436696 262 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 AC044797.1-201ENST00000445744 679 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 RPS20P4-201ENST00000461659 355 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 AC091153.1-201ENST00000466297 402 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 RPL35AP15-201ENST00000468042 339 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 AL132838.2-201ENST00000492041 314 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 RN7SL812P-201ENST00000493791 279 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
HOXC9P31274 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXC9P31274 HMGB3P16-201ENST00000508037 287 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 AC108064.1-201ENST00000513791 460 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 RNA5SP303-201ENST00000516192 130 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXC9P31274 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXC9P31274 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
HOXC9P31274 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXC9P31274 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXC9P31274 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 RPL21P136-201ENST00000605378 396 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 COX6CP4-201ENST00000605798 228 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 FAM27D1-201ENST00000612308 341 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms