Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
HOXD4P09016 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 SNORA27.3-201ENST00000364937 134 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXD4P09016 RNU6-1176P-201ENST00000390955 107 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC104297.1-201ENST00000393779 870 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 GLULP6-201ENST00000399502 913 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 RPS3AP23-201ENST00000401762 784 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AL035079.1-201ENST00000405210 287 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXD4P09016 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXD4P09016 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXD4P09016 RPL35AP21-201ENST00000437667 333 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXD4P09016 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 MTND2P25-201ENST00000449028 610 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXD4P09016 HSPE1P22-201ENST00000456856 327 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 RPL7AP10-201ENST00000481016 791 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC090686.1-201ENST00000481577 749 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 PPM1AP1-201ENST00000502740 1135 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 AK4P6-201ENST00000505168 528 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 MRPS33P2-201ENST00000507850 322 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXD4P09016 HMGB3P13-201ENST00000511263 607 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC012339.2-201ENST00000523996 453 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AP003049.1-201ENST00000529418 457 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.41□□□□□ -1.7
HOXD4P09016 CR383656.14-201ENST00000551951 406 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXD4P09016 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 AC022884.2-201ENST00000578535 580 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXD4P09016 AC084036.1-201ENST00000609190 508 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC097505.1-201ENST00000610199 565 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXD4P09016 LINC00216-201ENST00000623548 1126 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 AC106858.1-201ENST00000637497 429 ntBASIC4.41□□□□□ -1.7
HOXD4P09016 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXD4P09016 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXD4P09016 AC083899.2-201ENST00000423285 1376 ntBASIC4.4□□□□□ -1.7
HOXD4P09016 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXD4P09016 AC091046.3-201ENST00000631455 1574 ntBASIC4.4□□□□□ -1.7
HOXD4P09016 SAMMSON-226ENST00000642089 1582 ntBASIC4.4□□□□□ -1.7
HOXD4P09016 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HOXD4P09016 OR10J6P-201ENST00000289731 930 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 RNU4-39P-201ENST00000362455 127 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXD4P09016 SNORA70.10-201ENST00000384515 134 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 CCNB2P1-201ENST00000399411 1150 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 MTND2P9-201ENST00000422293 931 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXD4P09016 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 MTND4LP13-201ENST00000425022 298 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXD4P09016 TXNP5-201ENST00000441043 315 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 VN1R48P-201ENST00000448149 1036 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 AC234781.3-201ENST00000452540 973 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
HOXD4P09016 snoU13.1-201ENST00000459157 104 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 RPS23P7-201ENST00000466210 444 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 AC005412.2-201ENST00000492004 341 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.4□□□□□ -1.71
HOXD4P09016 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXD4P09016 AC106806.2-201ENST00000509365 500 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 AC025768.1-201ENST00000510057 267 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXD4P09016 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXD4P09016 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.4□□□□□ -1.71
HOXD4P09016 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXD4P09016 AC034205.1-201ENST00000520621 638 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXD4P09016 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXD4P09016 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXD4P09016 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXD4P09016 MIR4675-201ENST00000577898 77 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 FAM106CP-201ENST00000582212 507 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 AC105148.1-201ENST00000604961 409 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 AC083809.1-201ENST00000615051 472 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXD4P09016 AC016717.3-201ENST00000624730 554 ntBASIC4.4□□□□□ -1.71
HOXD4P09016 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.71
HOXD4P09016 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXD4P09016 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXD4P09016 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms