Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC013404.1-201ENST00000413068 249 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 HMGB1P49-201ENST00000418882 569 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AL133325.1-201ENST00000421090 382 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC007161.1-204ENST00000423039 460 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AL133173.1-201ENST00000423458 397 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 CYCSP12-201ENST00000437729 300 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AL035407.2-201ENST00000454090 378 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 RANP1-206ENST00000455094 651 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 VN1R40P-201ENST00000455196 941 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 RPL35AP28-201ENST00000459730 331 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 RN7SL591P-201ENST00000496150 292 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC021193.1-201ENST00000511607 420 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 MRPS16P1-201ENST00000523462 412 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AP000676.2-201ENST00000529711 301 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC145350.1-201ENST00000567426 208 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC087763.1-201ENST00000603391 286 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC114878.2-201ENST00000604863 1251 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC100827.5-201ENST00000615883 426 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AP002967.1-201ENST00000624203 539 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AC092376.2-201ENST00000622621 4116 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 Z95331.1-201ENST00000623075 23112 ntBASIC5.22□□□□□ -1.57
VPS4AQ9UN37 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS4AQ9UN37 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
VPS4AQ9UN37 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
VPS4AQ9UN37 AC021242.1-201ENST00000507315 2035 ntBASIC5.21□□□□□ -1.57
VPS4AQ9UN37 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 RNU1-87P-201ENST00000363727 170 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 RNU4-92P-201ENST00000363783 136 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 RNU6-549P-201ENST00000384433 107 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 RN7SKP273-201ENST00000411392 314 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 DPY19L1P2-201ENST00000426647 915 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 RPS6P15-201ENST00000431996 751 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 CYCSP6-201ENST00000434498 302 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC037198.2-201ENST00000478845 733 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC011037.1-201ENST00000483964 558 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 RN7SKP99-201ENST00000517028 307 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 DEFB130C-202ENST00000530001 230 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC027104.1-201ENST00000563702 681 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 DPPA2P4-201ENST00000563717 878 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AL132657.2-201ENST00000564417 358 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC095057.3-201ENST00000567102 1157 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC023824.3-201ENST00000569003 562 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 MTND4LP24-201ENST00000572277 291 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 MIR4472-2-201ENST00000582069 67 ntBASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS4AQ9UN37 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms